Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NW313_RS05085 Genome accession   NZ_CP102927
Coordinates   1091413..1092027 (+) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae strain N1252     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1086413..1097027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW313_RS05060 - 1086597..1087811 (-) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -
  NW313_RS05065 lpxH 1087907..1088647 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  NW313_RS05070 - 1088688..1089182 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  NW313_RS05075 cysS 1089328..1090707 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  NW313_RS05080 ruvC 1090795..1091316 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  NW313_RS05085 ruvA 1091413..1092027 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  NW313_RS05090 ruvB 1092083..1093087 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  NW313_RS05095 cydA 1093546..1095132 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  NW313_RS05100 cydB 1095150..1096286 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  NW313_RS05105 cydX 1096299..1096406 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  NW313_RS05110 ybgE 1096399..1096716 (+) 318 WP_001286617.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=618533 NW313_RS05085 WP_000580359.1 1091413..1092027(+) (ruvA) [Vibrio cholerae strain N1252]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=618533 NW313_RS05085 WP_000580359.1 1091413..1092027(+) (ruvA) [Vibrio cholerae strain N1252]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363