Detailed information NTG0618503

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NW313_RS00635
• Genome accession: NZ_CP102927
• Coordinates: 129544..130731 (+)
• Length: 395 a.a.
• NCBI ID: WP_000136721.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain N1252
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124544..135731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NW313_RS00600	-	125381..125851 (-)	471	WP_000224703.1	Dps family protein	-
NW313_RS00605	-	126021..126350 (-)	330	WP_001117042.1	DUF2500 domain-containing protein	-
NW313_RS00610	-	126555..126923 (+)	369	WP_001289435.1	DUF4145 domain-containing protein	-
NW313_RS00615	-	127426..127683 (+)	258	WP_000479993.1	hypothetical protein	-
NW313_RS00620	-	127800..128429 (+)	630	WP_000062274.1	lysoplasmalogenase	-
NW313_RS00625	-	128478..128744 (-)	267	WP_000645840.1	DUF1145 domain-containing protein	-
NW313_RS00630	rsmD	128741..129340 (-)	600	WP_001189766.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
NW313_RS00635	pilA	129544..130731 (+)	1188	WP_000136721.1	signal recognition particle-docking protein FtsY	Machinery gene
NW313_RS00640	ftsE	130780..131454 (+)	675	WP_000617864.1	cell division ATP-binding protein FtsE	-
NW313_RS00645	ftsX	131444..132436 (+)	993	WP_000279340.1	permease-like cell division protein FtsX	-
NW313_RS00650	rpoH	132606..133466 (+)	861	WP_000184359.1	RNA polymerase sigma factor RpoH	-
NW313_RS00655	sthA	133668..135068 (-)	1401	WP_000529898.1	Si-specific NAD(P)(+) transhydrogenase	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 43264.92 Da
• Isoelectric Point: 4.4258

>NTDB_id=618503 NW313_RS00635 WP_000136721.1 129544..130731(+) (pilA) [Vibrio cholerae strain N1252]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQTETALTETETETETETETETETETETETATVEPA
RIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTARASRQQLRD
GEALYGLLKEEMAEILSQVEQPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQV
WGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDAG
TGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE

Nucleotide

• Length: 1188 bp

>NTDB_id=618503 NW313_RS00635 WP_000136721.1 129544..130731(+) (pilA) [Vibrio cholerae strain N1252]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTGGCGATTCAAACGGAAACTGCGTTAACAGAAA
CAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGCCACGGTTGAACCTGCA
CGTATTGTTGAACAAGAGAAACCGACCGAAAGCTTCTTTGCGCGCTTAAAGCGCAGTTTGAGCCGCACCAAAGCGAATAT
TGGCGCTGGCTTCTTTGGCCTGTTTAAAGGCAAAAAGATTGATGATGACCTGTTCGAAGAGCTCGAAGAACAACTGCTGA
TTGCCGATGTCGGCATGGATACGACCAGCAAAATCATCGCTAATTTGACCGCCAGAGCTTCTCGCCAGCAACTGCGTGAT
GGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGCAGCCATTGGTGATCGACAC
TGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTAAAC
AGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAAGTG
TGGGGAGAGCGCAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGATTGA
AGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGCCGTCTGCAAAACAAAAGTAACCTGATGGAAG
AGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGTGCGCCACATGAAATCATGTTGACGCTGGATGCGGGT
ACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCTTGA
TGGCACCGCTAAAGGTGGCGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCGAGA
AAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA

Domains

Predicted by InterProScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (111-172)

• SRP54-type protein, GTPase domain (SRP54) (192-391)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50	86.076	0.43