Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FHQ13_RS23920 Genome accession   NZ_CP085501
Coordinates   4656409..4656696 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain A24     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4651409..4661696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHQ13_RS23900 (FHQ13_023900) - 4652583..4652780 (+) 198 WP_001048091.1 DUF4083 domain-containing protein -
  FHQ13_RS23905 (FHQ13_023905) - 4652812..4653273 (+) 462 WP_000024999.1 NUDIX hydrolase -
  FHQ13_RS23910 (FHQ13_023910) nadE 4653323..4654141 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  FHQ13_RS23915 (FHQ13_023915) - 4654412..4656292 (+) 1881 WP_049107625.1 ABC transporter permease -
  FHQ13_RS23920 (FHQ13_023920) abrB 4656409..4656696 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FHQ13_RS23925 (FHQ13_023925) - 4656972..4657919 (+) 948 WP_000099746.1 serine protease -
  FHQ13_RS23930 (FHQ13_023930) - 4657961..4658269 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  FHQ13_RS23935 (FHQ13_023935) - 4658376..4659311 (+) 936 WP_000877965.1 aldo/keto reductase -
  FHQ13_RS23940 (FHQ13_023940) - 4659452..4660533 (+) 1082 Protein_4651 MFS transporter -
  FHQ13_RS23945 (FHQ13_023945) - 4660828..4661052 (-) 225 WP_000162602.1 hypothetical protein -
  FHQ13_RS23950 (FHQ13_023950) - 4661137..4661484 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=618501 FHQ13_RS23920 WP_000648324.1 4656409..4656696(+) (abrB) [Bacillus cereus strain A24]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=618501 FHQ13_RS23920 WP_000648324.1 4656409..4656696(+) (abrB) [Bacillus cereus strain A24]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526