Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FHQ13_RS14420 Genome accession   NZ_CP085501
Coordinates   2815779..2816063 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain A24     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2810779..2821063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHQ13_RS14385 (FHQ13_014385) tmk 2810971..2811597 (+) 627 WP_000677218.1 dTMP kinase -
  FHQ13_RS14390 (FHQ13_014390) holB 2811633..2812616 (+) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  FHQ13_RS14395 (FHQ13_014395) - 2812622..2813449 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  FHQ13_RS14400 (FHQ13_014400) yabA 2813464..2813814 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  FHQ13_RS14405 (FHQ13_014405) - 2813897..2814637 (+) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FHQ13_RS14410 (FHQ13_014410) - 2814624..2814914 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  FHQ13_RS14415 (FHQ13_014415) rsmI 2814883..2815758 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FHQ13_RS14420 (FHQ13_014420) abrB 2815779..2816063 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FHQ13_RS14425 (FHQ13_014425) metG 2816549..2818531 (+) 1983 WP_000134132.1 methionine--tRNA ligase -
  FHQ13_RS14430 (FHQ13_014430) - 2818698..2819465 (+) 768 WP_006915843.1 TatD family hydrolase -
  FHQ13_RS14435 (FHQ13_014435) rnmV 2819680..2820237 (+) 558 WP_000692836.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=618482 FHQ13_RS14420 WP_000843036.1 2815779..2816063(-) (abrB) [Bacillus cereus strain A24]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=618482 FHQ13_RS14420 WP_000843036.1 2815779..2816063(-) (abrB) [Bacillus cereus strain A24]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851