Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   FHP23_RS25905 Genome accession   NZ_CP085498
Coordinates   4995376..4996740 (-) Length   454 a.a.
NCBI ID   WP_139848102.1    Uniprot ID   -
Organism   Bacillus cereus strain A22     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4990376..5001740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP23_RS25870 (FHP23_025870) - 4990439..4991134 (-) 696 WP_000466511.1 hypothetical protein -
  FHP23_RS25875 (FHP23_025875) - 4991121..4991909 (-) 789 WP_000120044.1 hypothetical protein -
  FHP23_RS25880 (FHP23_025880) - 4991937..4992506 (-) 570 WP_044584982.1 hypothetical protein -
  FHP23_RS25885 (FHP23_025885) - 4992624..4993097 (-) 474 WP_000511548.1 hypothetical protein -
  FHP23_RS25890 (FHP23_025890) raiA 4993502..4994044 (-) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  FHP23_RS25895 (FHP23_025895) cspC 4994367..4994564 (-) 198 WP_001990088.1 cold shock protein CspC -
  FHP23_RS25900 (FHP23_025900) - 4994691..4995395 (-) 705 WP_044584983.1 ComF family protein -
  FHP23_RS25905 (FHP23_025905) comFA 4995376..4996740 (-) 1365 WP_139848102.1 ATP-dependent helicase ComFA Machinery gene
  FHP23_RS25910 (FHP23_025910) - 4996868..4998298 (-) 1431 WP_139848101.1 C40 family peptidase -
  FHP23_RS25915 (FHP23_025915) - 4998447..4998761 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  FHP23_RS25920 (FHP23_025920) - 4998934..4999776 (-) 843 WP_000684725.1 DegV family protein -
  FHP23_RS25925 (FHP23_025925) - 5000013..5000648 (+) 636 WP_098255156.1 YigZ family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 51687.76 Da        Isoelectric Point: 9.9834

>NTDB_id=618448 FHP23_RS25905 WP_139848102.1 4995376..4996740(-) (comFA) [Bacillus cereus strain A22]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNLNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIQIAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADRMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIISGRYHRHPLPVPLFCWCGNWKKNLMHKRIPRVLLQWLQTYLNKNFPIFL
FVPHVRYIEEISLLLKLLNNRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLINALFTL

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=618448 FHP23_RS25905 WP_139848102.1 4995376..4996740(-) (comFA) [Bacillus cereus strain A22]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATACAGATAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCGAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACTTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTATTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGTGGGAATTGGAAAAAAA
ACCTCATGCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAATTTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACTATTAAATAATCGAATTGAAGGTGTACATGC
AGAAGATCCGGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTCGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCGCCGTATGGAGAGGTCATTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATTAATGCATTGTTTACTT
TGTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(107-254)

Helicase conserved C-terminal domain (Helicase_C)

(313-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.357

97.357

0.5
  comFA Latilactobacillus sakei subsp. sakei 23K

41.687

88.767

0.37