Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   IUJ58_RS22235 Genome accession   NZ_CP085485
Coordinates   4302442..4302864 (-) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia aryabhattai strain KNUC0118     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4297442..4307864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ58_RS22205 (IUJ58_22145) - 4297608..4298093 (+) 486 WP_274447742.1 hypothetical protein -
  IUJ58_RS22210 (IUJ58_22150) - 4298348..4298893 (-) 546 WP_274447743.1 GNAT family N-acetyltransferase -
  IUJ58_RS22215 (IUJ58_22155) - 4299186..4300466 (+) 1281 WP_274447744.1 glycosyltransferase -
  IUJ58_RS22220 (IUJ58_22160) - 4300490..4301146 (+) 657 WP_274447745.1 TetR/AcrR family transcriptional regulator -
  IUJ58_RS22225 (IUJ58_22165) - 4301299..4301892 (+) 594 WP_274447746.1 hypothetical protein -
  IUJ58_RS22230 (IUJ58_22170) - 4301933..4302277 (-) 345 WP_028414497.1 DUF1516 family protein -
  IUJ58_RS22235 (IUJ58_22175) nucA/comI 4302442..4302864 (-) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  IUJ58_RS22240 (IUJ58_22180) - 4303005..4303469 (-) 465 WP_216144723.1 FixH family protein -
  IUJ58_RS22245 (IUJ58_22185) - 4303507..4304889 (-) 1383 WP_216144724.1 PepSY-associated TM helix domain-containing protein -
  IUJ58_RS22250 (IUJ58_22190) - 4305041..4306027 (-) 987 WP_216144725.1 glycerophosphodiester phosphodiesterase family protein -
  IUJ58_RS22255 (IUJ58_22195) - 4306204..4306845 (-) 642 WP_216144726.1 response regulator -
  IUJ58_RS22260 (IUJ58_22200) - 4306846..4307667 (-) 822 WP_216144727.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=618377 IUJ58_RS22235 WP_013057949.1 4302442..4302864(-) (nucA/comI) [Priestia aryabhattai strain KNUC0118]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=618377 IUJ58_RS22235 WP_013057949.1 4302442..4302864(-) (nucA/comI) [Priestia aryabhattai strain KNUC0118]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAGGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTGATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGTGCCGAAGAAAACCGCCGTGAATCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGTGGTGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATCTCACATCAAGTAGACGAGTTTCCAGACGGCACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507