Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IUJ58_RS16125 Genome accession   NZ_CP085485
Coordinates   3177017..3178744 (+) Length   575 a.a.
NCBI ID   WP_216143629.1    Uniprot ID   -
Organism   Priestia aryabhattai strain KNUC0118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3172017..3183744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ58_RS16100 (IUJ58_16070) - 3172214..3172447 (+) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -
  IUJ58_RS16105 (IUJ58_16075) - 3172447..3173343 (+) 897 WP_216143627.1 polyprenyl synthetase family protein -
  IUJ58_RS16110 (IUJ58_16080) dxs 3173664..3175565 (+) 1902 WP_216143628.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IUJ58_RS16115 (IUJ58_16085) - 3175562..3176389 (+) 828 WP_029714773.1 TlyA family RNA methyltransferase -
  IUJ58_RS16120 (IUJ58_16090) ahrC 3176551..3177000 (+) 450 WP_013059136.1 transcriptional regulator AhrC/ArgR -
  IUJ58_RS16125 (IUJ58_16095) recN 3177017..3178744 (+) 1728 WP_216143629.1 DNA repair protein RecN Machinery gene
  IUJ58_RS16130 (IUJ58_16100) spoIVB 3178927..3180207 (+) 1281 WP_216143630.1 SpoIVB peptidase -
  IUJ58_RS16135 (IUJ58_16105) spo0A 3180435..3181223 (+) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  IUJ58_RS16140 (IUJ58_16110) - 3181614..3182945 (-) 1332 WP_216143631.1 peptide MFS transporter -
  IUJ58_RS16145 (IUJ58_16115) - 3183258..3183410 (-) 153 WP_013059130.1 YycC family protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64702.19 Da        Isoelectric Point: 4.7368

>NTDB_id=618368 IUJ58_RS16125 WP_216143629.1 3177017..3178744(+) (recN) [Priestia aryabhattai strain KNUC0118]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSLKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKDYADISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLDSVAQDLLVEANNVSTIRRKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKQTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=618368 IUJ58_RS16125 WP_216143629.1 3177017..3178744(+) (recN) [Priestia aryabhattai strain KNUC0118]
TTGTTAGCTGAATTATCCATTAAAAATTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGTGAAACAGGAGCGGGAAAGTCAATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCGGAGT
TTGTCCGCCACGGAACAGACAGAGCCGAAATCGAAGGGCTTTTCTTATTTGATGAAGAACAGCATCCAAGTCATGAAAAA
GCTAAACAAGTCGGTTTAGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGACATTACCACAAATGGGAAAAGTATTTG
CCGGATCAACGGTAAGCTTGTCACGTTAGCTATCCTACGTGAAGTCGGACAAACGTTAATTGATATACATGGACAGCACG
AGCACCAAGACTTAATGAACCAAGATCGTCACTTAACTCTTCTTGATCAGTATGGAGGAGAAAAAGTAGAAGAGGCTTTG
ACGGAGTATCGAGAGGTATTTTCGAGGTATACATCGTTAAAAAAACAGTTGGATCAATTAACTGAAAATGAGCAGCAGAT
GGCGCATCGCCTAGATCTTATTCAATTTCAATTAGATGAAATCAAAGCGGCAAATTTGCAGCTGAACGAAGATGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCCAACTTTGAAAAGATCTATACGTCACTAAACGATGCGTACAATGCGCTGCACGGT
GAGCATCAAGGTTTAGATTGGGTAGGCGTAGCCATGAATCATACGGAGGATATTTCGTCACTGGAAAAAGACTATGCCGA
TATTTCTGAAATCATTTCATCTAGTTTCTATCAGCTAGAAGACGCGTCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGC
GTAGATGAAATTCTAGAATATGCTGCACAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGCAA
GATCAAAGAACAGTTAGACAGCGTAGCGCAGGATTTATTAGTAGAAGCTAACAATGTTTCAACTATTCGAAGAAAACTTG
CTCAAGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTTTATATGGCTAAGACCGTATTTCAAATTAAATTCTCC
GTCGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACAAAAGACGGCATTGACAGCGTAGA
ATTTTATATTTCTACCAATCCAGGTGAACCGTTAAAGCCTCTTGCAAAAGTAGCTTCAGGAGGAGAGCTTTCAAGAATTA
TGCTGGCGTTAAAGAGCATTTTCTCTAAGCATCAAGGTGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAGATCCATGCCATTTCCGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
GCAGGTAGCAGCTATGGCAGATACTCACCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTGC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCAGACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.931

100

0.65