Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NWO26_RS08855 Genome accession   NZ_CP102797
Coordinates   1702815..1704791 (+) Length   658 a.a.
NCBI ID   WP_011680734.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697815..1709791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS08835 - 1698637..1699485 (+) 849 WP_011680730.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  NWO26_RS08840 - 1699495..1700040 (+) 546 WP_011680731.1 ECF-type riboflavin transporter substrate-binding protein -
  NWO26_RS08845 - 1700106..1701782 (+) 1677 WP_113870432.1 ABC transporter ATP-binding protein -
  NWO26_RS08850 - 1701775..1702605 (+) 831 WP_011680733.1 energy-coupling factor transporter transmembrane component T family protein -
  NWO26_RS08855 recP/tkt 1702815..1704791 (+) 1977 WP_011680734.1 transketolase Machinery gene
  NWO26_RS08860 - 1704853..1705023 (+) 171 Protein_1692 ascorbate 6-phosphate lactonase -
  NWO26_RS08865 - 1705040..1705711 (-) 672 WP_002946492.1 potassium channel family protein -
  NWO26_RS08870 - 1705751..1707115 (-) 1365 WP_011680735.1 TrkH family potassium uptake protein -
  NWO26_RS08875 rsmG 1707185..1707898 (-) 714 WP_002946490.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NWO26_RS08880 - 1708195..1708731 (+) 537 WP_113870431.1 DUF177 domain-containing protein -
  NWO26_RS08885 - 1708888..1709577 (+) 690 WP_084828484.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71395.84 Da        Isoelectric Point: 4.7134

>NTDB_id=618336 NWO26_RS08855 WP_011680734.1 1702815..1704791(+) (recP/tkt) [Streptococcus thermophilus strain ST057-1]
MSNLSVNAIRFLGVDAINQSNSGHPGVVMGAAPMGYTLFTRQMHVNPEVPNWINRDRFVLSAGHGSMLLYALLHLSGFKD
LSIEELKQFRQWGSKTPGHPEFGHTVGVDATSGPLGQGIAMAVGMAQAERFLASRYNKEGFPIFDHYTYVIAGDGCFMEG
VSAEASSYAGLQKLDKLIVLYDSNDINLDGETKDSFTEDVRARYEAYGWNTEFVQDGTDIEAINAAIESAKASGKPSLIE
VKTIIGHGAPNKQGTNGVHGAPLGPDETAAARENLGWNHAPFEIPKEVYADFKENTVDRGRQAYDTWVALVDEYKQSYPE
LGSELARILEGKDAVEFQSSDFPAVENGYSQATRNSSQDALNAIADKVPTFLGGSADLAHSNMTYIKSEGLQDDEHRLNR
NIQFGVREFAMGAILNGMSLHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLNVYRPADARETQAAWYQAVTSKSTPTALVLTRQNLTVEEGTDFDKVSRGAYVVHETAADFDTILLASGSEVNLAV
ASAKALESEGYKVRVVSVPSTDVFDAQDQAYKEEVLPNAVRRRVAIEMAASLPWYKYVGLDGAVIGIDTFGASAPAAKII
EEYGFTVENIVETVKGMN

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=618336 NWO26_RS08855 WP_011680734.1 1702815..1704791(+) (recP/tkt) [Streptococcus thermophilus strain ST057-1]
ATGTCTAACCTTTCAGTAAATGCTATCCGTTTTCTAGGGGTAGATGCGATTAACCAATCTAACTCTGGCCACCCTGGTGT
GGTAATGGGTGCAGCACCAATGGGTTACACTTTGTTTACTAGACAAATGCATGTCAATCCTGAAGTTCCAAATTGGATTA
ATCGTGACCGTTTTGTTTTGTCAGCAGGTCATGGTTCAATGCTTCTTTATGCGCTCCTCCATTTGTCAGGATTTAAAGAT
TTGAGCATTGAAGAGCTTAAACAATTCCGTCAATGGGGTTCTAAGACACCTGGTCACCCAGAATTTGGCCATACAGTTGG
TGTAGATGCTACGTCAGGTCCACTTGGGCAAGGTATTGCTATGGCTGTCGGTATGGCACAAGCTGAACGTTTCTTGGCTT
CTCGATATAACAAGGAAGGCTTCCCAATCTTTGACCATTATACTTATGTTATTGCGGGGGATGGTTGCTTTATGGAAGGC
GTTTCGGCCGAAGCATCATCTTACGCTGGTCTTCAAAAATTGGATAAATTGATTGTCTTGTACGATTCAAATGATATCAA
TCTTGACGGTGAAACTAAAGATTCATTTACTGAAGATGTACGTGCACGTTATGAAGCTTATGGTTGGAACACTGAATTTG
TTCAAGATGGAACAGATATTGAAGCTATCAACGCTGCTATTGAAAGTGCAAAAGCAAGTGGTAAACCATCTTTGATTGAG
GTTAAGACTATCATTGGTCATGGTGCTCCTAATAAACAAGGAACTAACGGTGTTCACGGTGCTCCTCTTGGACCAGATGA
AACAGCAGCTGCAAGAGAAAACTTGGGTTGGAACCATGCTCCATTTGAAATTCCAAAAGAAGTTTATGCTGATTTCAAGG
AAAATACAGTTGATCGTGGTCGTCAGGCCTATGACACTTGGGTTGCTTTGGTAGATGAGTACAAACAATCTTACCCAGAA
CTTGGTTCTGAACTTGCACGCATTCTTGAAGGTAAGGATGCAGTTGAATTCCAATCTTCAGACTTCCCAGCTGTTGAAAA
TGGTTATTCACAAGCAACTCGTAATTCAAGTCAAGATGCTTTGAATGCTATTGCTGATAAGGTGCCAACATTCCTAGGTG
GTTCTGCGGATTTGGCTCACTCAAATATGACTTACATTAAATCTGAAGGTCTACAAGATGATGAACATCGTCTTAACCGT
AACATTCAATTTGGTGTACGTGAGTTTGCGATGGGAGCAATCTTGAATGGTATGTCTCTCCATGGTGGACTTCGTGTTTA
CGGTGGTACCTTCTTCGTATTCTCAGACTATGTCAAAGCAGCAGTTCGTTTGTCTGCACTTCAAGGACTTCCAGTTACTT
ATGTCTTTACTCACGACTCTATTGCAGTTGGTGAAGATGGACCAACCCATGAACCAATCGAACATCTAGCTGGACTTCGT
GCTATTCCAAACCTTAATGTTTATCGTCCAGCAGACGCGCGTGAGACACAAGCTGCATGGTATCAAGCTGTAACTTCTAA
ATCAACACCTACGGCGCTTGTTTTGACACGTCAAAACTTGACTGTTGAAGAAGGAACAGATTTTGATAAAGTTTCAAGAG
GTGCTTACGTTGTTCATGAAACAGCAGCAGATTTTGATACTATTCTCCTTGCTTCTGGTTCAGAAGTAAATCTTGCAGTA
GCATCAGCAAAAGCTTTAGAATCAGAAGGTTACAAAGTTCGTGTTGTGAGTGTTCCATCAACAGATGTCTTTGATGCACA
AGATCAAGCCTACAAAGAGGAAGTTCTTCCAAATGCAGTTCGTCGTCGTGTAGCAATCGAAATGGCAGCAAGTCTACCAT
GGTATAAATATGTTGGTTTAGACGGTGCTGTGATTGGAATTGATACATTTGGTGCCTCAGCTCCAGCTGCTAAAATTATT
GAAGAATATGGCTTTACAGTAGAAAATATCGTTGAAACAGTAAAAGGTATGAACTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(544-650)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

74.429

99.848

0.743