Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NWO26_RS08500 Genome accession   NZ_CP102797
Coordinates   1637785..1638381 (-) Length   198 a.a.
NCBI ID   WP_113870440.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632785..1643381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS08490 - 1633998..1635246 (-) 1249 Protein_1618 ISL3 family transposase -
  NWO26_RS08495 pbp1a 1635455..1637785 (-) 2331 WP_113870441.1 penicillin-binding protein PBP1A -
  NWO26_RS08500 recU 1637785..1638381 (-) 597 WP_113870440.1 Holliday junction resolvase RecU Machinery gene
  NWO26_RS08505 - 1638458..1638973 (+) 516 WP_084828456.1 DUF1273 domain-containing protein -
  NWO26_RS08510 gpsB 1639082..1639414 (+) 333 WP_011680702.1 cell division regulator GpsB -
  NWO26_RS08520 - 1639948..1641114 (+) 1167 WP_082245768.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  NWO26_RS08525 - 1641117..1642979 (+) 1863 WP_113870439.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22767.34 Da        Isoelectric Point: 10.0784

>NTDB_id=618333 NWO26_RS08500 WP_113870440.1 1637785..1638381(-) (recU) [Streptococcus thermophilus strain ST057-1]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMNFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGCAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=618333 NWO26_RS08500 WP_113870440.1 1637785..1638381(-) (recU) [Streptococcus thermophilus strain ST057-1]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGAACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAAGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTGTGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.261

100

0.505