Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LI478_RS16115 Genome accession   NZ_CP085478
Coordinates   3280344..3280940 (-) Length   198 a.a.
NCBI ID   WP_102007271.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain Kp1604     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3275344..3285940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI478_RS16100 helD 3275552..3277606 (-) 2055 WP_032103554.1 DNA helicase IV -
  LI478_RS16105 - 3277731..3278177 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LI478_RS16110 yccS 3278195..3280330 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LI478_RS16115 sxy/tfoX 3280344..3280940 (-) 597 WP_102007271.1 TfoX/Sxy family DNA transformation protein Regulator
  LI478_RS16120 sulA 3281289..3281798 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LI478_RS16125 ompA 3282151..3283221 (+) 1071 WP_002898408.1 porin OmpA -
  LI478_RS16130 matP 3283353..3283805 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LI478_RS16135 - 3283991..3285748 (+) 1758 WP_032414743.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22606.18 Da        Isoelectric Point: 9.9391

>NTDB_id=618296 LI478_RS16115 WP_102007271.1 3280344..3280940(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp1604]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRWASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=618296 LI478_RS16115 WP_102007271.1 3280344..3280940(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp1604]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGATGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51