Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   NWO26_RS02595 Genome accession   NZ_CP102797
Coordinates   504102..505172 (-) Length   356 a.a.
NCBI ID   WP_014608300.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 499102..510172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS02580 pstB 499827..500585 (+) 759 WP_014621574.1 phosphate ABC transporter ATP-binding protein PstB -
  NWO26_RS02585 phoU 500613..501266 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  NWO26_RS02590 - 501400..503940 (+) 2541 WP_011225973.1 M1 family metallopeptidase -
  NWO26_RS02595 xerS 504102..505172 (-) 1071 WP_014608300.1 tyrosine recombinase XerS Machinery gene
  NWO26_RS02600 - 505397..506386 (-) 990 WP_002950753.1 lipoate--protein ligase -
  NWO26_RS02605 - 506569..507237 (+) 669 WP_014608301.1 hypothetical protein -
  NWO26_RS02610 - 507185..507619 (+) 435 WP_080998419.1 hypothetical protein -
  NWO26_RS02615 glgP 507725..509989 (-) 2265 WP_014608303.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41519.67 Da        Isoelectric Point: 9.6822

>NTDB_id=618261 NWO26_RS02595 WP_014608300.1 504102..505172(-) (xerS) [Streptococcus thermophilus strain ST057-1]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=618261 NWO26_RS02595 WP_014608300.1 504102..505172(-) (xerS) [Streptococcus thermophilus strain ST057-1]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATATAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTGAATATGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826