Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LB888_RS02790 Genome accession   NZ_CP085470
Coordinates   610785..612551 (-) Length   588 a.a.
NCBI ID   WP_318753535.1    Uniprot ID   A0AAU0N913
Organism   Globicatella sp. PHS-GS-PNBC-21-1553     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 605785..617551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB888_RS02775 (LB888_02740) - 607407..608126 (+) 720 WP_318753533.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LB888_RS02780 (LB888_02745) - 608351..608821 (+) 471 WP_276647796.1 glutathione peroxidase -
  LB888_RS02785 (LB888_02750) rcrQ 609008..610792 (-) 1785 WP_318753534.1 ABC transporter ATP-binding protein Regulator
  LB888_RS02790 (LB888_02755) rcrP 610785..612551 (-) 1767 WP_318753535.1 ABC transporter ATP-binding protein Regulator
  LB888_RS02795 (LB888_02760) - 612545..612682 (-) 138 WP_318753536.1 hypothetical protein -
  LB888_RS02800 (LB888_02765) - 612724..613008 (-) 285 WP_318753537.1 helix-turn-helix domain-containing protein -
  LB888_RS02805 (LB888_02770) - 613340..614884 (-) 1545 WP_318753538.1 ABC-F family ATP-binding cassette domain-containing protein -
  LB888_RS02810 (LB888_02775) thrB 615417..616295 (-) 879 WP_318753539.1 homoserine kinase -
  LB888_RS02815 - 616296..616715 (-) 420 WP_318753540.1 hypothetical protein -
  LB888_RS02820 (LB888_02780) - 616693..617490 (-) 798 WP_318753541.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65331.48 Da        Isoelectric Point: 9.5173

>NTDB_id=618231 LB888_RS02790 WP_318753535.1 610785..612551(-) (rcrP) [Globicatella sp. PHS-GS-PNBC-21-1553]
MLKIFKRMNRKEVMMAVVSVLFIMAQVWLDLKVPDYMSEVTKKLVTPGTELKELYQPGGMMLLLSLLSFATSLLVGFLAA
RLGASFTRTLRRDIFEHVLSFSAKETQSFSVPSLITRTTNDIIQLQMLIAFGLQVMVKGPIMAGWAMVKISNKNGQWMLA
TALAVLLLLIVITIIMVLAFPKQKMIQKLTDKLNAISRENLTGIRVIRAYNAEKFRNEKFDVANSELTDTNLFSMRMFSL
MMPLMTIVSSGLSLSVYWIGAYLIQNAALNMKITLFGDMAVFTSYAMQVVMGFMMMTMIFVMLPRAIVSAKRINEVLETH
SVIDYPATTKTNSQANEYVLEYENVTFKYSDSAEPVISNVSFKAKKGQTIAFIGSTGSGKSTLINLLPRFYDVTSGAIKL
NGQNIKEIAHDDLNNRVGYIPQKAVIFSGTIASNLNFGESNESPLTEEKMNAALELAQAKEFVLSKENGLQSTVAQEGAN
FSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDKALRHDLAVQTADMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THQELLANNEVYQEIAYSQLSKEELTNG

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=618231 LB888_RS02790 WP_318753535.1 610785..612551(-) (rcrP) [Globicatella sp. PHS-GS-PNBC-21-1553]
ATGTTAAAAATATTCAAACGAATGAATAGAAAAGAAGTGATGATGGCTGTCGTCAGTGTTCTATTCATTATGGCCCAAGT
CTGGCTAGATTTAAAAGTACCAGATTATATGTCAGAAGTGACCAAAAAATTAGTGACGCCAGGTACAGAACTTAAAGAGC
TCTATCAACCTGGAGGGATGATGTTACTCTTATCATTATTAAGTTTTGCGACCAGTCTATTAGTTGGCTTTTTAGCAGCT
CGATTGGGAGCAAGTTTTACACGAACATTAAGACGTGATATTTTTGAACACGTGTTAAGTTTCTCAGCCAAGGAAACACA
AAGCTTTTCAGTCCCAAGTTTAATTACACGTACAACAAATGATATTATTCAATTACAAATGTTAATTGCCTTTGGTTTGC
AAGTAATGGTCAAAGGACCCATTATGGCCGGCTGGGCGATGGTTAAAATATCTAACAAAAATGGTCAATGGATGTTAGCA
ACCGCATTAGCCGTACTTTTACTATTAATTGTTATTACCATTATTATGGTATTGGCTTTTCCAAAGCAAAAAATGATCCA
AAAATTAACCGATAAGTTGAATGCTATCTCACGTGAAAACTTAACCGGGATACGTGTCATTCGAGCTTACAATGCTGAAA
AATTCCGCAATGAGAAATTTGATGTTGCCAACAGTGAATTGACCGATACCAATTTGTTCTCAATGCGAATGTTCTCATTA
ATGATGCCATTAATGACGATAGTATCTAGTGGGTTATCGTTATCGGTTTATTGGATTGGGGCTTATCTCATTCAAAATGC
AGCTTTAAATATGAAAATAACACTCTTTGGCGATATGGCAGTCTTTACTTCTTATGCGATGCAAGTGGTCATGGGGTTCA
TGATGATGACGATGATTTTTGTCATGCTACCAAGAGCGATTGTGTCTGCTAAACGTATTAATGAAGTATTAGAGACGCAT
TCTGTGATTGACTATCCTGCAACAACCAAAACGAACAGTCAAGCGAATGAATATGTTTTAGAATATGAAAATGTAACCTT
TAAATATAGTGATAGTGCTGAACCCGTTATTTCGAATGTTAGCTTCAAGGCTAAAAAGGGACAAACAATTGCCTTTATCG
GTTCCACAGGTAGTGGTAAGAGTACCTTAATTAATTTATTACCACGTTTTTACGATGTGACCAGTGGTGCTATTAAGTTA
AATGGACAAAACATCAAAGAGATTGCCCATGATGATTTAAATAATAGGGTGGGCTATATACCACAAAAAGCCGTCATCTT
TAGTGGAACCATTGCCTCCAATTTGAATTTTGGTGAAAGTAATGAATCGCCTTTAACGGAAGAAAAAATGAATGCGGCTT
TAGAGTTAGCACAAGCGAAAGAATTTGTATTAAGTAAAGAAAACGGCTTGCAATCAACAGTGGCTCAAGAAGGTGCAAAT
TTCTCAGGGGGTCAAAAACAACGACTAGCAATTGCCCGTGCTTTAGCGCGCAAACCAGAAATTTTAATATTCGATGATTC
CTTCTCAGCTTTAGACTATAAAACGGATAAAGCGTTGAGACATGATTTAGCAGTTCAAACGGCTGATATGACGAAGTTAA
TTGTCGCGCAACGTATTTCAACCATTATGGATGCAGATTTAATCTTAGTATTAGATCAAGGGAAAGTAGTTGGTCAAGGT
ACGCATCAAGAATTATTAGCTAATAATGAAGTGTATCAAGAAATTGCCTACTCACAATTATCAAAGGAGGAATTAACCAA
TGGCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-291)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

59.5

100

0.607