Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LB888_RS02785 Genome accession   NZ_CP085470
Coordinates   609008..610792 (-) Length   594 a.a.
NCBI ID   WP_318753534.1    Uniprot ID   A0AAU0N8X8
Organism   Globicatella sp. PHS-GS-PNBC-21-1553     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 604008..615792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB888_RS02770 (LB888_02735) - 605512..606927 (-) 1416 WP_318753532.1 LysM peptidoglycan-binding domain-containing protein -
  LB888_RS02775 (LB888_02740) - 607407..608126 (+) 720 WP_318753533.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LB888_RS02780 (LB888_02745) - 608351..608821 (+) 471 WP_276647796.1 glutathione peroxidase -
  LB888_RS02785 (LB888_02750) rcrQ 609008..610792 (-) 1785 WP_318753534.1 ABC transporter ATP-binding protein Regulator
  LB888_RS02790 (LB888_02755) rcrP 610785..612551 (-) 1767 WP_318753535.1 ABC transporter ATP-binding protein Regulator
  LB888_RS02795 (LB888_02760) - 612545..612682 (-) 138 WP_318753536.1 hypothetical protein -
  LB888_RS02800 (LB888_02765) - 612724..613008 (-) 285 WP_318753537.1 helix-turn-helix domain-containing protein -
  LB888_RS02805 (LB888_02770) - 613340..614884 (-) 1545 WP_318753538.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65714.16 Da        Isoelectric Point: 5.3529

>NTDB_id=618230 LB888_RS02785 WP_318753534.1 609008..610792(-) (rcrQ) [Globicatella sp. PHS-GS-PNBC-21-1553]
MAKKQPQSEKALKRALRYADGYLIPIVIALIFSIISSVITVIGPDKMSEMMDVITQGVMVGIDLNKIDKIGKTLVILYLT
AALMGYAQSFIVATISQRYTQRLRRAIAEKMNRLPLRYFDSRPTGDVLSIITNDLDTVGQSLNQSLGTLVSATVLLIGTL
FMMFKTNWVMALTVISSVFIGFIGMVFIMSKSRAHFKAQQKNLATVNGYIEEAYTGLSIVSSYNAADEMKGQFAKLNEQL
YGSAWKSQFLGGMMMPLMAFIGNFGYVMVSLMGAYLVLNGHITIGVIIAFMVYVRLFSQPLSQIAQAAQSLQSAGAALGR
VMDYLEADEMSDESYKTTQLSQIKGQVAFEHVNFGYDEGKTIIHDFSAEAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVN
SGQILIDGVNIKDMTRAELHEYFSMVLQDTWLFEGSIRDNLVFNQPEITQEEVIKAAKAVGIHHFITTLPQGYDTVLDDS
VQLSVGQKQLMTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDALMVGRTSFVIAHRLSTIRNADLILVMKDGNIIE
QGNHDQLMVQDGFYADLYNSQFENGNGTFEEEEL

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=618230 LB888_RS02785 WP_318753534.1 609008..610792(-) (rcrQ) [Globicatella sp. PHS-GS-PNBC-21-1553]
ATGGCTAAAAAACAACCACAATCAGAAAAAGCCCTAAAACGTGCTTTACGCTATGCCGATGGCTATTTAATTCCCATCGT
GATTGCCTTAATTTTCTCAATTATTAGTAGTGTTATCACCGTTATCGGACCTGATAAAATGAGTGAAATGATGGATGTCA
TTACTCAGGGGGTGATGGTTGGTATTGACTTAAATAAAATTGATAAAATAGGAAAAACATTAGTCATCTTGTATTTAACG
GCAGCGCTAATGGGGTATGCACAAAGCTTTATTGTGGCAACTATTTCACAACGCTATACCCAACGCCTTCGTCGTGCAAT
CGCTGAAAAGATGAATCGCCTTCCTTTACGATACTTTGATAGCCGTCCAACCGGTGATGTTTTATCCATTATTACCAATG
ACTTGGATACTGTTGGTCAAAGCTTAAATCAAAGTTTAGGAACATTAGTTTCGGCAACAGTTTTATTAATCGGTACGTTG
TTTATGATGTTTAAAACGAATTGGGTAATGGCTTTAACAGTAATCAGTTCGGTTTTTATTGGTTTTATTGGAATGGTCTT
TATTATGAGTAAATCACGTGCTCATTTTAAGGCGCAACAAAAGAACTTAGCTACTGTCAATGGCTATATCGAAGAAGCCT
ATACCGGACTCTCGATTGTCAGCAGTTATAATGCAGCCGATGAAATGAAGGGCCAATTTGCAAAATTAAATGAACAATTA
TACGGAAGTGCTTGGAAATCACAATTTTTAGGTGGGATGATGATGCCACTGATGGCTTTCATCGGGAACTTCGGTTATGT
GATGGTTAGTTTAATGGGCGCTTACCTAGTTTTAAATGGGCACATTACCATCGGGGTCATAATTGCCTTTATGGTGTACG
TTCGTTTATTCTCACAACCATTATCCCAAATTGCTCAAGCGGCACAAAGCTTACAATCAGCTGGAGCAGCCTTAGGTCGA
GTGATGGACTATTTAGAGGCAGACGAAATGAGTGACGAATCGTATAAAACAACCCAATTATCACAAATTAAAGGACAGGT
TGCCTTCGAACATGTTAATTTTGGCTATGATGAAGGTAAAACGATTATTCATGATTTCTCTGCCGAAGCTAAAGCGGGGC
AAAAAATCGCGATTGTTGGTCCAACCGGTGCTGGTAAAACAACGATTGTTAACTTATTAATGCGCTTCTATGAAGTCAAT
AGCGGTCAAATTTTAATCGATGGCGTCAATATTAAAGACATGACTCGTGCTGAATTGCATGAATATTTCAGTATGGTATT
ACAAGATACTTGGTTATTTGAGGGGAGTATTCGCGATAATTTAGTGTTCAATCAACCAGAGATAACACAAGAAGAAGTGA
TAAAGGCAGCCAAAGCGGTGGGGATTCATCATTTTATTACCACATTACCTCAAGGTTATGACACGGTATTGGATGATTCC
GTTCAATTATCAGTAGGACAAAAACAATTAATGACCATTGCCCGTGCGTTATTAAAAGATGCTCCATTATTAATTTTAGA
TGAAGCGACGAGCTCAGTGGATACTCGTACGGAAGAATTAATTCAAAAAGCAATGGACGCCTTAATGGTGGGGCGTACCT
CATTTGTCATTGCTCATCGACTTTCAACCATTCGTAATGCTGACTTAATATTAGTAATGAAAGACGGAAATATTATCGAA
CAAGGTAATCACGATCAATTAATGGTTCAAGACGGCTTTTATGCGGACTTATATAATAGTCAGTTTGAGAATGGTAATGG
CACCTTTGAGGAAGAAGAACTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(27-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

64.879

97.306

0.631