Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LEO80_RS19395 Genome accession   NZ_CP085468
Coordinates   4156344..4157783 (-) Length   479 a.a.
NCBI ID   WP_039040474.1    Uniprot ID   -
Organism   Aeromonas caviae strain 71485     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4151344..4162783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEO80_RS19365 (LEO80_19365) dagF 4151623..4152363 (+) 741 WP_171864964.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  LEO80_RS19370 (LEO80_19370) - 4152467..4154371 (+) 1905 WP_227263083.1 BglG family transcription antiterminator -
  LEO80_RS19375 (LEO80_19375) npr 4154387..4154659 (-) 273 WP_010675868.1 PTS phosphocarrier protein NPr -
  LEO80_RS19380 (LEO80_19380) rapZ 4154680..4155546 (-) 867 WP_227263084.1 RNase adapter RapZ -
  LEO80_RS19385 (LEO80_19385) ptsN 4155587..4156033 (-) 447 WP_103858763.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LEO80_RS19390 (LEO80_19390) hpf 4156036..4156323 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  LEO80_RS19395 (LEO80_19395) rpoN/rpoN1 4156344..4157783 (-) 1440 WP_039040474.1 RNA polymerase factor sigma-54 Machinery gene
  LEO80_RS19400 (LEO80_19400) lptB 4157849..4158574 (-) 726 WP_010675872.1 LPS export ABC transporter ATP-binding protein -
  LEO80_RS19405 (LEO80_19405) lptA 4158587..4159105 (-) 519 WP_010675873.1 lipopolysaccharide transport periplasmic protein LptA -
  LEO80_RS19410 (LEO80_19410) lptC 4159092..4159652 (-) 561 WP_039040473.1 LPS export ABC transporter periplasmic protein LptC -
  LEO80_RS19415 (LEO80_19415) kdsC 4159649..4160203 (-) 555 WP_227263085.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LEO80_RS19420 (LEO80_19420) - 4160203..4161198 (-) 996 WP_227263086.1 KpsF/GutQ family sugar-phosphate isomerase -
  LEO80_RS19425 (LEO80_19425) mlaF 4161405..4162205 (+) 801 WP_029314846.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53761.57 Da        Isoelectric Point: 4.3728

>NTDB_id=618222 LEO80_RS19395 WP_039040474.1 4156344..4157783(-) (rpoN/rpoN1) [Aeromonas caviae strain 71485]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENEAQETSQTETQDASQLDSSDAMAQESMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTATLED
IQAAVSSEEVEVELDEIEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLDEAREVIREHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQQLEPRPGNGIIQSESQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNEAYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=618222 LEO80_RS19395 WP_039040474.1 4156344..4157783(-) (rpoN/rpoN1) [Aeromonas caviae strain 71485]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACCCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAGAACGAGG
CGCAGGAAACCAGTCAGACAGAGACACAGGACGCCAGTCAACTCGACTCCAGCGATGCCATGGCCCAGGAGAGCATGCCG
GATGAACTGCCGGTGGACACCACCTGGGACGAGGTCTACTCGGCCGGTACAGCTCAGAGTGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGGGAGACCACCGAGAACCTGCAAGACTACCTGCTGTGGCAGATGCGGCTCACCCCGTTCA
GTGATGTGGATGCGGCCATCGCCCTTGCCATCATCGATGCCATCGACGAATCCGGGTATCTGACTGCCACCCTCGAGGAT
ATTCAGGCTGCAGTCAGCAGCGAGGAGGTAGAAGTCGAACTGGATGAGATCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGTTCGGTGCAAGAGTGTCTGCTGATCCAGCTCGGCCAGTATTCGCCGGACCTGCCCT
GGCTCGACGAAGCCAGAGAGGTGATCCGCGAACACATGGACCTGCTCGGCAATCGCGACTACCGCACCCTGGCTCGCAAG
ACCCGCCTCAAGGAGAGCGATCTCAAGGAGGTGCTGGATCTCATCCAGCAACTGGAGCCCAGACCCGGCAACGGCATCAT
CCAGAGTGAATCCCAGTACGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTTGAACTCAATCCGG
ACTCTGCTCCGCGCATCCGTGTCAACGAGGCCTATGCGGCCATGGCGCGCAATGCTCGCAGCAGCACGGATACCCAGTTC
ATCCGTTCTCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAGAGTCGTAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAGTACGGCGAAGAGGCCATGAAACCCATGGTACTCAACGACATCGCGG
AAGCGGTGGAGATGCATGAGTCGACCATTTCACGGGTCACGACCCAGAAGTACATGCATACGCCCCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGTCATGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCTATTCGTGCGCTCATCAA
GAAGCTGGTGACGGCGGAGAACCCCGCCAAGCCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.472

100

0.482