Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIS78_RS22560 Genome accession   NZ_CP085442
Coordinates   4351350..4353077 (-) Length   575 a.a.
NCBI ID   WP_252284382.1    Uniprot ID   -
Organism   Priestia megaterium strain KF18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4346350..4358077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS78_RS22540 (LIS78_22560) - 4346681..4346833 (+) 153 WP_064504589.1 YycC family protein -
  LIS78_RS22545 (LIS78_22565) - 4347147..4348478 (+) 1332 WP_164796481.1 peptide MFS transporter -
  LIS78_RS22550 (LIS78_22570) spo0A 4348871..4349659 (-) 789 WP_013084985.1 sporulation transcription factor Spo0A -
  LIS78_RS22555 (LIS78_22575) spoIVB 4349887..4351167 (-) 1281 WP_195781878.1 SpoIVB peptidase -
  LIS78_RS22560 (LIS78_22580) recN 4351350..4353077 (-) 1728 WP_252284382.1 DNA repair protein RecN Machinery gene
  LIS78_RS22565 (LIS78_22585) argR 4353094..4353543 (-) 450 WP_013059136.1 transcriptional regulator ArgR -
  LIS78_RS22570 (LIS78_22590) - 4353705..4354532 (-) 828 WP_252284383.1 TlyA family RNA methyltransferase -
  LIS78_RS22575 (LIS78_22595) dxs 4354529..4356430 (-) 1902 WP_195781876.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIS78_RS22580 (LIS78_22600) - 4356751..4357647 (-) 897 WP_252284384.1 polyprenyl synthetase family protein -
  LIS78_RS22585 (LIS78_22605) - 4357647..4357880 (-) 234 WP_013059140.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 64712.23 Da        Isoelectric Point: 4.8290

>NTDB_id=618150 LIS78_RS22560 WP_252284382.1 4351350..4353077(-) (recN) [Priestia megaterium strain KF18]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRHGTDRAEIEGLFLFDEEQHPSHEK
AKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTLAILREVGQTLIDIHGQHEHQDLMNQDRHLTLLDQYGGEKVEEAL
TEYREVFSRYTSFKKQLDQLTENEQQMAHRLDLIQFQLDEIKAANLQLNEDEELNEERLKISNFEKIYTSLNDAYNALHG
EHQGLDWVGVAMNHTEDISSLEKNYADISEIISSSFYQLEDASYKIRQQLDLLEFDPKRLDFIEARLNEINHLKRKYGQS
VDEILEYAAQIEDEIDRIENRDTHVSKIKEQLNSVAQDLLVEANNVSAIRKKLAQELTDSIHHELQELYMAKTVFQIKFS
VVNAGKNDVEVNGERIKFTKDGIDNVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVS
GRVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFIAKEIKGDRTTTSVLPLTLDEKVKEIGRMIAGAEITSLTKEH
AKELLDLADKMKHTI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=618150 LIS78_RS22560 WP_252284382.1 4351350..4353077(-) (recN) [Priestia megaterium strain KF18]
TTGTTAGCTGAATTATCCATTAAAAATTTTGCGATTATTGATGAACTTTCTGTTTCATTTGAAAAAGGCTTAACGGTATT
AACAGGCGAAACAGGAGCGGGAAAGTCAATTATTATTGATGCCATTTCATTGTTAGTAGGTGGAAGAGGCTCTTCAGAGT
TTGTCCGCCACGGAACAGACAGAGCCGAAATTGAAGGGCTTTTCTTATTTGATGAAGAACAGCATCCGAGTCACGAAAAA
GCTAAACAAGTCGGTTTAGAAGTGGAAGATGGAATGATTGTGCTTCGCCGAGACATTACGACAAATGGGAAAAGTATTTG
CCGGATCAACGGTAAGCTCGTAACGTTAGCTATCCTACGTGAAGTTGGACAGACGTTAATTGATATACATGGACAGCATG
AACACCAAGATTTAATGAATCAAGATCGTCACTTAACTCTTCTTGATCAATATGGAGGAGAAAAAGTAGAAGAGGCTTTA
ACGGAGTATCGAGAGGTATTTTCTAGGTATACATCGTTCAAAAAACAGTTAGATCAATTAACTGAAAATGAACAGCAGAT
GGCACATCGCCTAGATCTTATTCAATTTCAATTAGATGAAATTAAAGCGGCAAATTTGCAGCTGAACGAAGACGAGGAAC
TAAATGAAGAGCGTTTGAAGATTTCTAACTTTGAAAAGATCTATACTTCACTAAACGATGCGTACAATGCGCTGCACGGT
GAACATCAAGGTTTAGATTGGGTAGGCGTAGCAATGAATCATACGGAGGATATTTCTTCACTGGAAAAAAACTATGCCGA
TATTTCTGAAATCATTTCATCGAGTTTCTATCAGCTAGAAGACGCGTCTTATAAAATTCGTCAGCAGCTTGATTTATTAG
AATTTGATCCCAAACGCTTAGACTTTATTGAAGCGCGTTTAAATGAAATTAATCACTTAAAGCGTAAATACGGTCAAAGT
GTAGACGAAATTCTAGAATATGCAGCACAAATTGAAGATGAAATTGATCGTATTGAAAATCGAGATACGCATGTGAGTAA
GATCAAAGAGCAGTTAAACAGCGTAGCGCAGGATTTATTAGTAGAAGCTAACAATGTTTCAGCTATTCGAAAAAAACTTG
CTCAAGAGTTAACGGACAGCATCCATCATGAGCTTCAAGAACTGTATATGGCTAAGACCGTATTTCAAATTAAATTCTCT
GTTGTAAATGCAGGTAAAAATGACGTTGAAGTAAATGGAGAAAGAATAAAATTCACCAAAGACGGCATTGACAACGTAGA
GTTTTATATTTCTACCAACCCTGGTGAACCGTTAAAGCCTCTTGCAAAAGTAGCATCAGGAGGAGAACTGTCAAGAATTA
TGCTGGCGTTAAAGAGCATATTCTCTAAGCATCAAGGTGTGACGTCCATTATCTTTGATGAAGTTGATACAGGCGTAAGT
GGAAGAGTAGCTCAATCGATCGGTGAAAAAATACATGCCATTTCCGTTGATTCACAAGTTCTCTGTATATCTCATCTGCC
GCAGGTAGCAGCTATGGCAGATACTCATCTCTTTATTGCTAAAGAGATAAAAGGTGATCGTACAACGACGTCTGTTCTTC
CATTAACTCTTGATGAAAAAGTAAAAGAAATTGGTCGAATGATTGCAGGAGCTGAAATTACAAGCTTAACGAAGGAACAT
GCCAAAGAGCTTTTAGATTTAGCGGATAAGATGAAGCACACCATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

64.757

100

0.649