Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIS78_RS16620 Genome accession   NZ_CP085442
Coordinates   3249133..3250083 (-) Length   316 a.a.
NCBI ID   WP_116071119.1    Uniprot ID   A0A3D8X6B7
Organism   Priestia megaterium strain KF18     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3244133..3255083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS78_RS16600 (LIS78_16615) - 3245018..3245860 (-) 843 WP_016764829.1 manganese catalase family protein -
  LIS78_RS31450 - 3246209..3246331 (-) 123 WP_268241093.1 hypothetical protein -
  LIS78_RS16605 (LIS78_16620) - 3246461..3247417 (-) 957 WP_252284016.1 siderophore ABC transporter substrate-binding protein -
  LIS78_RS16610 (LIS78_16625) - 3247441..3248199 (-) 759 WP_013057889.1 ABC transporter ATP-binding protein -
  LIS78_RS16615 (LIS78_16630) - 3248193..3249140 (-) 948 WP_195782648.1 iron chelate uptake ABC transporter family permease subunit -
  LIS78_RS16620 (LIS78_16635) ceuB 3249133..3250083 (-) 951 WP_116071119.1 ABC transporter permease Machinery gene
  LIS78_RS16625 (LIS78_16640) - 3250690..3251496 (-) 807 WP_195782647.1 cell wall hydrolase -
  LIS78_RS16630 (LIS78_16645) - 3251859..3252113 (+) 255 WP_013057893.1 hypothetical protein -
  LIS78_RS16635 (LIS78_16650) - 3252195..3252359 (-) 165 WP_164795753.1 hypothetical protein -
  LIS78_RS16640 (LIS78_16655) - 3252685..3253290 (-) 606 WP_252284017.1 NAD(P)H-dependent oxidoreductase -
  LIS78_RS16645 (LIS78_16660) lepB 3253537..3254097 (-) 561 WP_028414470.1 signal peptidase I -
  LIS78_RS16650 (LIS78_16665) - 3254184..3254537 (-) 354 WP_195782645.1 DUF4440 domain-containing protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34977.21 Da        Isoelectric Point: 9.9188

>NTDB_id=618140 LIS78_RS16620 WP_116071119.1 3249133..3250083(-) (ceuB) [Priestia megaterium strain KF18]
MKFYQLILVFAVLAVSSLFIGVQDLSAVDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRIIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=618140 LIS78_RS16620 WP_116071119.1 3249133..3250083(-) (ceuB) [Priestia megaterium strain KF18]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTAGCAGTTTCATCTCTTTTTATAGGAGTACAAGATTTGTCAGC
AGTAGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTCAGTCGGTTTCCAAGGCTTTTGAGCATTATTA
TGGCGGGAATGAGCCTTAGCATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACGACTGCA
GGAACGATGGACTGGGCAAGACTTGGTGTATTAATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTTGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTCGGTTTAATGCTCGGTAGTATCGTAAGTTCCTTAGCTACCTTCATCGCCTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTGAGTATACC
CCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATATAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTTCCTTTTTTAGGATTGATTATTCCAAATATCGTATCAATTTACCGTGGAGATCATTTACGAAAAAGTCTGCCTCATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTTGCGTGTGATATTTTAGGAAGAATCATTATTTTTCCTTATGAAATTTCCATTG
GGTTAATGGTCGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D8X6B7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53

94.937

0.503