Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT34_RS16575 Genome accession   NZ_CP085431
Coordinates   3259004..3259954 (-) Length   316 a.a.
NCBI ID   WP_013057891.1    Uniprot ID   A0A0B6AV51
Organism   Priestia megaterium strain F20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3254004..3264954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT34_RS16555 (LIT34_16585) - 3254953..3255795 (-) 843 WP_016764829.1 manganese catalase family protein -
  LIT34_RS16560 (LIT34_16590) - 3256332..3257288 (-) 957 WP_053487467.1 siderophore ABC transporter substrate-binding protein -
  LIT34_RS16565 (LIT34_16595) - 3257312..3258070 (-) 759 WP_013057889.1 ABC transporter ATP-binding protein -
  LIT34_RS16570 (LIT34_16600) - 3258064..3259011 (-) 948 WP_013057890.1 iron chelate uptake ABC transporter family permease subunit -
  LIT34_RS16575 (LIT34_16605) ceuB 3259004..3259954 (-) 951 WP_013057891.1 ABC transporter permease Machinery gene
  LIT34_RS16580 (LIT34_16610) - 3260273..3261079 (-) 807 WP_013057892.1 cell wall hydrolase -
  LIT34_RS16585 (LIT34_16615) - 3261442..3261696 (+) 255 WP_013057893.1 hypothetical protein -
  LIT34_RS16590 (LIT34_16620) - 3261778..3261942 (-) 165 WP_013057894.1 hypothetical protein -
  LIT34_RS16595 (LIT34_16625) - 3262260..3262604 (-) 345 WP_013057895.1 hypothetical protein -
  LIT34_RS16600 (LIT34_16630) - 3262647..3263678 (-) 1032 WP_013057896.1 zinc-binding dehydrogenase -
  LIT34_RS16605 (LIT34_16635) - 3263684..3264730 (-) 1047 WP_013057897.1 galactitol-1-phosphate 5-dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35037.32 Da        Isoelectric Point: 9.9188

>NTDB_id=618084 LIT34_RS16575 WP_013057891.1 3259004..3259954(-) (ceuB) [Priestia megaterium strain F20]
MKFYQLILVFAVLSILSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=618084 LIT34_RS16575 WP_013057891.1 3259004..3259954(-) (ceuB) [Priestia megaterium strain F20]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTATCGATTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGTATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACGATGGACTGGGCAAGGCTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTGGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTCGGTTTAATGCTCGGTAGTATCGTAAGTTCCTTAGCTACCTTCATTGCCTATAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTTAGTATACC
GCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACTTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTCTTAGGATTAATCATCCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGCAAAAGCCTGCCTCATAC
AGCGCTTCTTGGAGCTGTGTTCGTACTTGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCATATGAAATCTCTATCG
GGTTAATGGTAGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6AV51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.318

95.57

0.5