Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NU955_RS14795 Genome accession   NZ_CP102762
Coordinates   3134596..3134958 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3129596..3139958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS14785 - 3131874..3133952 (-) 2079 WP_000505934.1 methyl-accepting chemotaxis protein -
  NU955_RS14790 - 3133999..3134535 (-) 537 WP_000729759.1 chemotaxis protein CheW -
  NU955_RS14795 pilH 3134596..3134958 (-) 363 WP_000101096.1 response regulator Machinery gene
  NU955_RS14800 pilG 3134982..3135365 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  NU955_RS14805 - 3135648..3136286 (+) 639 WP_002027721.1 hypothetical protein -
  NU955_RS14810 - 3136346..3137464 (+) 1119 WP_001260815.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=618062 NU955_RS14795 WP_000101096.1 3134596..3134958(-) (pilH) [Acinetobacter baumannii strain AOR07-BL]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=618062 NU955_RS14795 WP_000101096.1 3134596..3134958(-) (pilH) [Acinetobacter baumannii strain AOR07-BL]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
TGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392