Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NU955_RS08235 Genome accession   NZ_CP102762
Coordinates   1715512..1716147 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1710512..1721147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS08210 - 1711352..1712365 (+) 1014 WP_005111009.1 aminoglycoside phosphotransferase family protein -
  NU955_RS08215 murU 1712365..1713054 (+) 690 WP_005111008.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  NU955_RS08220 rsmG 1713142..1713774 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NU955_RS08225 - 1713796..1714578 (+) 783 WP_000057212.1 ParA family protein -
  NU955_RS08230 - 1714575..1715462 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  NU955_RS08235 exbB 1715512..1716147 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NU955_RS08240 - 1716163..1716591 (+) 429 WP_000669684.1 ExbD/TolR family protein -
  NU955_RS08245 msbA 1716588..1718315 (+) 1728 WP_005128798.1 lipid A export permease/ATP-binding protein MsbA -
  NU955_RS08250 lpxK 1718318..1719328 (+) 1011 WP_269440940.1 tetraacyldisaccharide 4'-kinase -
  NU955_RS08255 kdsB 1719338..1720099 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NU955_RS08260 - 1720111..1721091 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=618041 NU955_RS08235 WP_000264037.1 1715512..1716147(+) (exbB) [Acinetobacter baumannii strain AOR07-BL]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=618041 NU955_RS08235 WP_000264037.1 1715512..1716147(+) (exbB) [Acinetobacter baumannii strain AOR07-BL]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393