Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LIT30_RS22580 | Genome accession | NZ_CP085426 |
| Coordinates | 4322343..4323395 (-) | Length | 350 a.a. |
| NCBI ID | WP_013059177.1 | Uniprot ID | A0A8D4BHW7 |
| Organism | Priestia megaterium strain F16 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4317343..4328395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LIT30_RS22540 (LIT30_22550) | - | 4318358..4319182 (+) | 825 | WP_013059169.1 | YqhG family protein | - |
| LIT30_RS22545 (LIT30_22555) | - | 4319207..4319392 (-) | 186 | WP_013059170.1 | YqzE family protein | - |
| LIT30_RS22550 (LIT30_22560) | comGG | 4319436..4319810 (-) | 375 | WP_013059171.1 | competence type IV pilus minor pilin ComGG | - |
| LIT30_RS22555 (LIT30_22565) | comGF | 4319800..4320237 (-) | 438 | WP_013059172.1 | competence type IV pilus minor pilin ComGF | - |
| LIT30_RS22560 (LIT30_22570) | - | 4320234..4320572 (-) | 339 | WP_013059173.1 | type II secretion system protein | - |
| LIT30_RS22565 (LIT30_22575) | comGD | 4320556..4320993 (-) | 438 | WP_013059174.1 | competence type IV pilus minor pilin ComGD | - |
| LIT30_RS22570 (LIT30_22580) | comGC | 4320980..4321291 (-) | 312 | WP_013059175.1 | competence type IV pilus major pilin ComGC | - |
| LIT30_RS22575 (LIT30_22585) | comGB | 4321306..4322352 (-) | 1047 | WP_013059176.1 | competence type IV pilus assembly protein ComGB | - |
| LIT30_RS22580 (LIT30_22590) | comGA | 4322343..4323395 (-) | 1053 | WP_013059177.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LIT30_RS22585 (LIT30_22595) | - | 4323665..4324048 (-) | 384 | WP_013059178.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| LIT30_RS22590 (LIT30_22600) | - | 4324310..4324546 (+) | 237 | WP_013059179.1 | DUF2626 domain-containing protein | - |
| LIT30_RS22595 (LIT30_22605) | - | 4324584..4325216 (-) | 633 | WP_013059180.1 | MBL fold metallo-hydrolase | - |
| LIT30_RS22600 (LIT30_22610) | - | 4325425..4325601 (+) | 177 | WP_013059181.1 | DUF2759 domain-containing protein | - |
| LIT30_RS22605 (LIT30_22615) | - | 4325637..4326539 (-) | 903 | WP_013059182.1 | M14 family metallocarboxypeptidase | - |
| LIT30_RS22610 (LIT30_22620) | - | 4326650..4327618 (-) | 969 | WP_013059183.1 | ROK family glucokinase | - |
| LIT30_RS22615 (LIT30_22625) | - | 4327621..4327827 (-) | 207 | WP_013059184.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 39625.02 Da Isoelectric Point: 9.0586
>NTDB_id=618038 LIT30_RS22580 WP_013059177.1 4322343..4323395(-) (comGA) [Priestia megaterium strain F16]
MTEIEQFATYIIRDACECRSSDVHIVPRKKDAVIQLRIDQELILKRVISKEMSERLISHFKFLGGMDIGERRKPQNGALT
TSIDHYQVNLRLSTLPTSHDESLVIRLLPHQQSTSLKHLSLFPEHTKKLISLLKFSHGLIIFTGPTGSGKTTTLYTLLHE
VKHLFNRNVITLEDPIEKPSETVLQVQVNERAGITYTTGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLTTMH
TKDTKGSLYRLLEFGVSFQEMEQTLVAVAAQRLVEIRCPLCSGKCHPACKKMRKHRQSSIYELLYGKELSAVMREVKGEN
ADYDYKTLRDVILKGIALGYLYPHSLDGWG
MTEIEQFATYIIRDACECRSSDVHIVPRKKDAVIQLRIDQELILKRVISKEMSERLISHFKFLGGMDIGERRKPQNGALT
TSIDHYQVNLRLSTLPTSHDESLVIRLLPHQQSTSLKHLSLFPEHTKKLISLLKFSHGLIIFTGPTGSGKTTTLYTLLHE
VKHLFNRNVITLEDPIEKPSETVLQVQVNERAGITYTTGLKAILRHDPDIIMVGEIRDSETAKIAVRAALTGHLVLTTMH
TKDTKGSLYRLLEFGVSFQEMEQTLVAVAAQRLVEIRCPLCSGKCHPACKKMRKHRQSSIYELLYGKELSAVMREVKGEN
ADYDYKTLRDVILKGIALGYLYPHSLDGWG
Nucleotide
Download Length: 1053 bp
>NTDB_id=618038 LIT30_RS22580 WP_013059177.1 4322343..4323395(-) (comGA) [Priestia megaterium strain F16]
TTGACCGAAATTGAACAGTTTGCTACTTACATTATACGAGATGCATGTGAGTGCCGAAGTTCTGATGTGCATATTGTGCC
CCGAAAGAAAGATGCTGTGATTCAGCTGCGAATTGACCAGGAGCTTATTTTAAAGAGGGTTATTTCAAAGGAAATGTCTG
AACGGCTCATTTCGCATTTTAAATTTTTAGGGGGAATGGATATTGGCGAGCGCAGAAAACCTCAAAATGGTGCATTGACC
ACTTCCATTGATCACTATCAAGTAAATTTGCGTTTATCAACCCTTCCTACTTCTCATGATGAAAGTCTTGTTATTCGGCT
TTTGCCTCATCAACAATCTACATCTCTCAAACATTTATCTCTTTTTCCTGAACACACTAAAAAGCTTATTTCTCTCTTGA
AATTCTCTCATGGATTAATTATTTTTACCGGTCCTACAGGGTCAGGTAAAACCACTACTCTATATACTCTTTTACACGAA
GTAAAGCACCTTTTTAATCGAAATGTTATTACACTAGAAGATCCTATTGAAAAACCGAGTGAAACCGTGCTTCAAGTACA
GGTAAATGAACGGGCGGGGATTACGTACACGACTGGTTTAAAAGCTATATTGCGCCATGACCCAGACATTATCATGGTGG
GAGAAATAAGAGATAGTGAGACTGCCAAAATTGCTGTGAGAGCAGCACTTACCGGACACTTGGTTTTGACAACGATGCAT
ACTAAAGATACAAAAGGATCTTTGTACAGGCTGCTTGAATTTGGGGTTAGCTTTCAAGAAATGGAACAGACTCTTGTAGC
AGTAGCTGCACAGCGCCTTGTAGAAATTCGCTGTCCGCTGTGTTCCGGAAAATGCCACCCCGCTTGTAAAAAAATGAGAA
AGCATCGTCAGTCCAGCATATACGAATTGCTTTATGGCAAGGAGCTTAGTGCAGTGATGAGAGAAGTGAAAGGAGAAAAT
GCGGATTATGATTATAAGACGCTCCGAGATGTGATTCTAAAAGGAATCGCGCTAGGCTATTTATATCCGCATTCGCTAGA
CGGATGGGGGTAA
TTGACCGAAATTGAACAGTTTGCTACTTACATTATACGAGATGCATGTGAGTGCCGAAGTTCTGATGTGCATATTGTGCC
CCGAAAGAAAGATGCTGTGATTCAGCTGCGAATTGACCAGGAGCTTATTTTAAAGAGGGTTATTTCAAAGGAAATGTCTG
AACGGCTCATTTCGCATTTTAAATTTTTAGGGGGAATGGATATTGGCGAGCGCAGAAAACCTCAAAATGGTGCATTGACC
ACTTCCATTGATCACTATCAAGTAAATTTGCGTTTATCAACCCTTCCTACTTCTCATGATGAAAGTCTTGTTATTCGGCT
TTTGCCTCATCAACAATCTACATCTCTCAAACATTTATCTCTTTTTCCTGAACACACTAAAAAGCTTATTTCTCTCTTGA
AATTCTCTCATGGATTAATTATTTTTACCGGTCCTACAGGGTCAGGTAAAACCACTACTCTATATACTCTTTTACACGAA
GTAAAGCACCTTTTTAATCGAAATGTTATTACACTAGAAGATCCTATTGAAAAACCGAGTGAAACCGTGCTTCAAGTACA
GGTAAATGAACGGGCGGGGATTACGTACACGACTGGTTTAAAAGCTATATTGCGCCATGACCCAGACATTATCATGGTGG
GAGAAATAAGAGATAGTGAGACTGCCAAAATTGCTGTGAGAGCAGCACTTACCGGACACTTGGTTTTGACAACGATGCAT
ACTAAAGATACAAAAGGATCTTTGTACAGGCTGCTTGAATTTGGGGTTAGCTTTCAAGAAATGGAACAGACTCTTGTAGC
AGTAGCTGCACAGCGCCTTGTAGAAATTCGCTGTCCGCTGTGTTCCGGAAAATGCCACCCCGCTTGTAAAAAAATGAGAA
AGCATCGTCAGTCCAGCATATACGAATTGCTTTATGGCAAGGAGCTTAGTGCAGTGATGAGAGAAGTGAAAGGAGAAAAT
GCGGATTATGATTATAAGACGCTCCGAGATGTGATTCTAAAAGGAATCGCGCTAGGCTATTTATATCCGCATTCGCTAGA
CGGATGGGGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
58.571 |
100 |
0.586 |