Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LIT30_RS16410 Genome accession   NZ_CP085426
Coordinates   3193843..3194265 (+) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia megaterium strain F16     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3188843..3199265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT30_RS16385 (LIT30_16395) - 3189162..3189983 (+) 822 WP_252298567.1 histidine kinase -
  LIT30_RS16390 (LIT30_16400) - 3189984..3190625 (+) 642 WP_053487482.1 response regulator transcription factor -
  LIT30_RS16395 (LIT30_16405) - 3190801..3191713 (+) 913 Protein_3187 glycerophosphodiester phosphodiesterase family protein -
  LIT30_RS16400 (LIT30_16410) - 3191826..3193208 (+) 1383 WP_082522657.1 PepSY domain-containing protein -
  LIT30_RS16405 (LIT30_16415) - 3193238..3193702 (+) 465 WP_055992078.1 FixH family protein -
  LIT30_RS16410 (LIT30_16420) nucA/comI 3193843..3194265 (+) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LIT30_RS16415 (LIT30_16425) - 3194419..3194772 (+) 354 WP_241747304.1 DUF1516 family protein -
  LIT30_RS16420 (LIT30_16430) - 3194813..3195406 (-) 594 WP_013057951.1 hypothetical protein -
  LIT30_RS16425 (LIT30_16435) - 3195562..3196218 (-) 657 WP_013057952.1 TetR/AcrR family transcriptional regulator -
  LIT30_RS16430 (LIT30_16440) - 3196241..3197521 (-) 1281 WP_252287537.1 glycosyltransferase -
  LIT30_RS16435 (LIT30_16445) - 3197819..3198364 (+) 546 WP_013057954.1 GNAT family N-acetyltransferase -
  LIT30_RS16440 (LIT30_16450) - 3198664..3199149 (-) 486 WP_053487488.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=618028 LIT30_RS16410 WP_013057949.1 3193843..3194265(+) (nucA/comI) [Priestia megaterium strain F16]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=618028 LIT30_RS16410 WP_013057949.1 3193843..3194265(+) (nucA/comI) [Priestia megaterium strain F16]
TTGAAAAAAATTGTTTCTGGAATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAATCGAGGCGCCGGGTCTTGGATCTCACATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507