Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LIS80_RS25630 Genome accession   NZ_CP085413
Coordinates   4934324..4935673 (-) Length   449 a.a.
NCBI ID   WP_000900493.1    Uniprot ID   -
Organism   Bacillus paranthracis strain KF11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4929324..4940673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS25610 (LIS80_25645) secA 4929649..4932156 (-) 2508 WP_000579382.1 preprotein translocase subunit SecA -
  LIS80_RS25615 (LIS80_25650) raiA 4932433..4932975 (-) 543 WP_000671191.1 ribosome-associated translation inhibitor RaiA -
  LIS80_RS25620 (LIS80_25655) cspC 4933296..4933493 (-) 198 WP_001162041.1 cold shock protein CspC -
  LIS80_RS25625 (LIS80_25660) - 4933620..4934324 (-) 705 WP_002028884.1 ComF family protein -
  LIS80_RS25630 (LIS80_25665) comFA 4934324..4935673 (-) 1350 WP_000900493.1 ATP-dependent helicase ComFA Machinery gene
  LIS80_RS25635 (LIS80_25670) - 4935800..4937245 (-) 1446 WP_000499502.1 C40 family peptidase -
  LIS80_RS25640 (LIS80_25675) - 4937393..4937707 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  LIS80_RS25645 (LIS80_25680) - 4937881..4938723 (-) 843 WP_000844764.1 DegV family protein -
  LIS80_RS25650 (LIS80_25685) - 4938963..4939598 (+) 636 WP_000926695.1 YigZ family protein -
  LIS80_RS25655 (LIS80_25690) - 4939673..4940329 (+) 657 Protein_5013 LCP family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51011.49 Da        Isoelectric Point: 9.7406

>NTDB_id=617939 LIS80_RS25630 WP_000900493.1 4934324..4935673(-) (comFA) [Bacillus paranthracis strain KF11]
MLGGKQLLLEELSSDLRRELSDLKKRGEVVCVQGITKNTSKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECAVLVRGIHERNGDRELNPLQWNGALSIGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVRQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=617939 LIS80_RS25630 WP_000900493.1 4934324..4935673(-) (comFA) [Bacillus paranthracis strain KF11]
ATGCTTGGTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAGGGG
AGAGGTTGTATGTGTACAAGGTATAACGAAGAATACTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGAATTCATGAAAGAAACGGAGACAGGGAGCTAAATCCATTACAGTGGAATGGGGCTTT
ATCGATTGGTCAGGAGTTGGCGGCGCAAGGAGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTCCAAAAAGGAGAAAGAGTGTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCAAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTTAGGCAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAATGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATCGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATATGGTGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGCGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-408)

Type III restriction enzyme, res subunit (ResIII)

(110-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

93.096

0.49
  comFA Latilactobacillus sakei subsp. sakei 23K

40

90.2

0.361