Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LIS80_RS20930 Genome accession   NZ_CP085413
Coordinates   4057240..4057986 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus paranthracis strain KF11     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4052240..4062986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS20910 (LIS80_20940) dnaG 4053010..4054806 (-) 1797 WP_000528216.1 DNA primase -
  LIS80_RS20915 (LIS80_20945) - 4055479..4055622 (-) 144 WP_153623457.1 hypothetical protein -
  LIS80_RS20920 (LIS80_20950) - 4055658..4056470 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  LIS80_RS20925 (LIS80_20955) - 4056500..4057132 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  LIS80_RS20930 (LIS80_20960) recO 4057240..4057986 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  LIS80_RS20935 (LIS80_20965) - 4058020..4058163 (-) 144 WP_000883924.1 YqzL family protein -
  LIS80_RS20940 (LIS80_20970) era 4058340..4059245 (-) 906 WP_001080241.1 GTPase Era -
  LIS80_RS20945 (LIS80_20975) - 4059238..4059636 (-) 399 WP_001014347.1 cytidine deaminase -
  LIS80_RS20950 (LIS80_20980) - 4059736..4060089 (-) 354 WP_000715482.1 diacylglycerol kinase family protein -
  LIS80_RS20955 (LIS80_20985) ybeY 4060086..4060556 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  LIS80_RS20960 (LIS80_20990) - 4060553..4062697 (-) 2145 WP_000946450.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=617929 LIS80_RS20930 WP_000487010.1 4057240..4057986(-) (recO) [Bacillus paranthracis strain KF11]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=617929 LIS80_RS20930 WP_000487010.1 4057240..4057986(-) (recO) [Bacillus paranthracis strain KF11]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTACGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552