Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIS80_RS20325 Genome accession   NZ_CP085413
Coordinates   3955439..3957178 (-) Length   579 a.a.
NCBI ID   WP_000947749.1    Uniprot ID   A0A1J9YIX3
Organism   Bacillus paranthracis strain KF11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3950439..3962178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS20300 (LIS80_20330) - 3951478..3951711 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  LIS80_RS20305 (LIS80_20335) - 3951761..3952489 (-) 729 WP_000172563.1 glycerophosphodiester phosphodiesterase -
  LIS80_RS20310 (LIS80_20340) - 3952540..3952686 (+) 147 WP_000803575.1 YycC family protein -
  LIS80_RS20315 (LIS80_20345) spo0A 3952940..3953734 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  LIS80_RS20320 (LIS80_20350) spoIVB 3954022..3955320 (-) 1299 WP_012644590.1 SpoIVB peptidase -
  LIS80_RS20325 (LIS80_20355) recN 3955439..3957178 (-) 1740 WP_000947749.1 DNA repair protein RecN Machinery gene
  LIS80_RS20330 (LIS80_20360) argR 3957445..3957894 (-) 450 WP_001032581.1 arginine repressor ArgR -
  LIS80_RS20335 (LIS80_20365) - 3958037..3958876 (-) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  LIS80_RS20340 (LIS80_20370) dxs 3958880..3960772 (-) 1893 WP_000366458.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIS80_RS20345 (LIS80_20375) ispA 3961075..3961965 (-) 891 WP_000150364.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65775.82 Da        Isoelectric Point: 4.8260

>NTDB_id=617927 LIS80_RS20325 WP_000947749.1 3955439..3957178(-) (recN) [Bacillus paranthracis strain KF11]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKIDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=617927 LIS80_RS20325 WP_000947749.1 3955439..3957178(-) (recN) [Bacillus paranthracis strain KF11]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGTTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAAGCGGATTTAAAGATAGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGGGATGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCCTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAACATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCAGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACAAATCCGGGTGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCCCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9YIX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601