Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LIS80_RS19485 Genome accession   NZ_CP085413
Coordinates   3807361..3807795 (-) Length   144 a.a.
NCBI ID   WP_000811499.1    Uniprot ID   A0A1J9ZQC5
Organism   Bacillus paranthracis strain KF11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3802361..3812795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS19460 (LIS80_19490) - 3802435..3802986 (+) 552 WP_079994077.1 RNA-guided endonuclease TnpB family protein -
  LIS80_RS19465 (LIS80_19495) - 3803015..3803224 (+) 210 WP_157405038.1 zinc ribbon domain-containing protein -
  LIS80_RS19470 (LIS80_19500) - 3803384..3803941 (+) 558 WP_000062073.1 PadR family transcriptional regulator -
  LIS80_RS19475 (LIS80_19505) metE 3804610..3806898 (+) 2289 WP_001007591.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  LIS80_RS19480 (LIS80_19510) comJ 3806935..3807324 (-) 390 WP_000424028.1 competence protein ComJ -
  LIS80_RS19485 (LIS80_19515) nucA/comI 3807361..3807795 (-) 435 WP_000811499.1 DNA-entry nuclease Machinery gene
  LIS80_RS19490 (LIS80_19520) - 3808032..3808781 (+) 750 WP_000388462.1 DUF3967 domain-containing protein -
  LIS80_RS19495 (LIS80_19525) kinB 3808832..3810106 (-) 1275 WP_000420386.1 sporulation sensor histidine kinase KinB -
  LIS80_RS19500 (LIS80_19530) - 3810416..3810616 (+) 201 WP_000929285.1 hypothetical protein -
  LIS80_RS19505 (LIS80_19535) - 3810740..3811897 (+) 1158 WP_000434568.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15996.35 Da        Isoelectric Point: 8.4331

>NTDB_id=617925 LIS80_RS19485 WP_000811499.1 3807361..3807795(-) (nucA/comI) [Bacillus paranthracis strain KF11]
MKQLKGIIISIIAILSIVVAVYEVLVPEETSIKKTNAYDQVLEFPKDRYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=617925 LIS80_RS19485 WP_000811499.1 3807361..3807795(-) (nucA/comI) [Bacillus paranthracis strain KF11]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTGTAGTAGCGGTGTATGAAGTGCTTGTTCC
AGAGGAAACAAGTATTAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGATCGATACCCAGAGACAGGGA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTGTGTACAATCGACCGTGGTGGAGCTGCGGATAGAAGAAAA
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCGCACATCGAATATATAAGTCCAGCAGATAATCGCGGAGCAGGCTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTAAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9ZQC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

72.072

77.083

0.556