Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIS80_RS09920 Genome accession   NZ_CP085413
Coordinates   1951484..1951771 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain KF11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946484..1956771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS09900 (LIS80_09900) - 1947660..1947857 (+) 198 WP_001048096.1 DUF4083 domain-containing protein -
  LIS80_RS09905 (LIS80_09905) - 1947889..1948350 (+) 462 WP_000035005.1 NUDIX hydrolase -
  LIS80_RS09910 (LIS80_09910) nadE 1948399..1949217 (-) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  LIS80_RS09915 (LIS80_09915) - 1949487..1951367 (+) 1881 WP_001026024.1 FtsX-like permease family protein -
  LIS80_RS09920 (LIS80_09920) abrB 1951484..1951771 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIS80_RS09925 (LIS80_09925) - 1952046..1952996 (+) 951 WP_001089036.1 serine protease -
  LIS80_RS09930 (LIS80_09930) ugpC 1953205..1954308 (-) 1104 WP_000829434.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  LIS80_RS09935 (LIS80_09935) - 1954575..1955438 (-) 864 WP_000615937.1 helix-turn-helix domain-containing protein -
  LIS80_RS09940 (LIS80_09940) - 1955507..1956367 (-) 861 WP_000064378.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=617918 LIS80_RS09920 WP_000648330.1 1951484..1951771(+) (abrB) [Bacillus paranthracis strain KF11]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=617918 LIS80_RS09920 WP_000648330.1 1951484..1951771(+) (abrB) [Bacillus paranthracis strain KF11]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516