Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIS80_RS08090 Genome accession   NZ_CP085413
Coordinates   1579910..1580512 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus paranthracis strain KF11     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1574910..1585512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS08070 (LIS80_08070) dnaD 1575226..1575933 (+) 708 WP_000728540.1 DNA replication protein DnaD -
  LIS80_RS08075 (LIS80_08075) nth 1575949..1576596 (+) 648 WP_000933025.1 endonuclease III -
  LIS80_RS08080 (LIS80_08080) - 1576600..1577118 (+) 519 WP_000442680.1 YpoC family protein -
  LIS80_RS08085 (LIS80_08085) - 1577142..1579844 (-) 2703 WP_001283127.1 PBP1A family penicillin-binding protein -
  LIS80_RS08090 (LIS80_08090) recU 1579910..1580512 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  LIS80_RS08095 (LIS80_08095) - 1580616..1581641 (+) 1026 WP_041185207.1 DUF2515 domain-containing protein -
  LIS80_RS08100 (LIS80_08100) - 1581765..1581941 (-) 177 WP_001982922.1 hypothetical protein -
  LIS80_RS08105 (LIS80_08105) - 1582027..1582269 (+) 243 WP_001252039.1 hypothetical protein -
  LIS80_RS08110 (LIS80_08110) - 1582285..1582629 (+) 345 WP_000872959.1 YppE family protein -
  LIS80_RS08115 (LIS80_08115) - 1582655..1582846 (-) 192 WP_000242664.1 YppF family protein -
  LIS80_RS08120 (LIS80_08120) - 1583024..1583494 (+) 471 WP_000487707.1 YppG family protein -
  LIS80_RS08125 (LIS80_08125) - 1583650..1584072 (+) 423 WP_000546264.1 CotD family spore coat protein -
  LIS80_RS08130 (LIS80_08130) - 1584129..1584683 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  LIS80_RS08135 (LIS80_08135) gpsB 1584781..1585119 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=617917 LIS80_RS08090 WP_000155592.1 1579910..1580512(-) (recU) [Bacillus paranthracis strain KF11]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=617917 LIS80_RS08090 WP_000155592.1 1579910..1580512(-) (recU) [Bacillus paranthracis strain KF11]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGAAGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63