Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIS80_RS06745 Genome accession   NZ_CP085413
Coordinates   1333987..1334310 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus paranthracis strain KF11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328987..1339310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS06720 (LIS80_06720) - 1329194..1330480 (+) 1287 WP_000247018.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LIS80_RS06725 (LIS80_06725) sipW 1330672..1331241 (+) 570 WP_000767811.1 signal peptidase I SipW -
  LIS80_RS06730 (LIS80_06730) - 1331302..1331892 (+) 591 WP_000172846.1 TasA family protein -
  LIS80_RS06735 (LIS80_06735) - 1332050..1332892 (+) 843 WP_000917717.1 DUF4047 domain-containing protein -
  LIS80_RS06740 (LIS80_06740) calY 1333319..1333912 (+) 594 WP_000053739.1 biofilm matrix protein CalY -
  LIS80_RS06745 (LIS80_06745) sinR 1333987..1334310 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  LIS80_RS06750 (LIS80_06750) - 1334390..1334524 (-) 135 WP_000276223.1 anti-repressor SinI family protein -
  LIS80_RS06755 (LIS80_06755) inhA1 1334866..1337253 (+) 2388 WP_001035931.1 M6 family metalloprotease immune inhibitor InhA1 -
  LIS80_RS06760 (LIS80_06760) - 1337425..1338792 (+) 1368 WP_000116810.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=617915 LIS80_RS06745 WP_000578882.1 1333987..1334310(-) (sinR) [Bacillus paranthracis strain KF11]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=617915 LIS80_RS06745 WP_000578882.1 1333987..1334310(-) (sinR) [Bacillus paranthracis strain KF11]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692