Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIS80_RS00220 Genome accession   NZ_CP085413
Coordinates   40398..40682 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain KF11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35398..45682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS00185 (LIS80_00185) tmk 35552..36178 (+) 627 WP_000677232.1 dTMP kinase -
  LIS80_RS00190 (LIS80_00190) holB 36214..37197 (+) 984 WP_000978582.1 DNA polymerase III subunit delta' -
  LIS80_RS00195 (LIS80_00195) - 37203..38030 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  LIS80_RS00200 (LIS80_00200) yabA 38045..38395 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  LIS80_RS00205 (LIS80_00205) - 38516..39256 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LIS80_RS00210 (LIS80_00210) - 39243..39533 (+) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  LIS80_RS00215 (LIS80_00215) rsmI 39502..40377 (+) 876 WP_000267830.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LIS80_RS00220 (LIS80_00220) abrB 40398..40682 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIS80_RS00225 (LIS80_00225) metG 41201..43183 (+) 1983 WP_000159679.1 methionine--tRNA ligase -
  LIS80_RS00230 (LIS80_00230) - 43350..44117 (+) 768 WP_000895835.1 TatD family hydrolase -
  LIS80_RS00235 (LIS80_00235) rnmV 44335..44892 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=617898 LIS80_RS00220 WP_000843036.1 40398..40682(-) (abrB) [Bacillus paranthracis strain KF11]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=617898 LIS80_RS00220 WP_000843036.1 40398..40682(-) (abrB) [Bacillus paranthracis strain KF11]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCCTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851