Detailed information NTG0617890

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: LIT28_RS26235
• Genome accession: NZ_CP085409
• Coordinates: 5060589..5061938 (-)
• Length: 449 a.a.
• NCBI ID: WP_252209185.1
• Uniprot ID: -
• Organism: Bacillus thuringiensis strain KF1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5055589..5066938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIT28_RS26215 (LIT28_26235)	secA	5055918..5058425 (-)	2508	WP_242254925.1	preprotein translocase subunit SecA	-
LIT28_RS26220 (LIT28_26240)	raiA	5058700..5059242 (-)	543	WP_060632875.1	ribosome-associated translation inhibitor RaiA	-
LIT28_RS26225 (LIT28_26245)	cspC	5059561..5059758 (-)	198	WP_001990088.1	cold shock protein CspC	-
LIT28_RS26230 (LIT28_26250)	-	5059885..5060589 (-)	705	WP_242254926.1	ComF family protein	-
LIT28_RS26235 (LIT28_26255)	comFA	5060589..5061938 (-)	1350	WP_252209185.1	ATP-dependent helicase ComFA	Machinery gene
LIT28_RS26240 (LIT28_26260)	-	5062066..5063484 (-)	1419	WP_242254929.1	C40 family peptidase	-
LIT28_RS26245 (LIT28_26265)	-	5063631..5063945 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
LIT28_RS26250 (LIT28_26270)	-	5064119..5064961 (-)	843	WP_063221805.1	DegV family protein	-
LIT28_RS26255 (LIT28_26275)	-	5065201..5065836 (+)	636	WP_242254932.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 50961.71 Da
• Isoelectric Point: 9.9005

>NTDB_id=617890 LIT28_RS26235 WP_252209185.1 5060589..5061938(-) (comFA) [Bacillus thuringiensis strain KF1]
MLAGKQLLLEELSSDLLRDLNNLKKKGEVVCVQGIKKKASKYTCQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECTVLVRGIAERNGEKGLNLLQWNGTLSTGQQLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSINVAALYGGSVDHEKDAALVVATTHQLLRYYKAFHVMIVDEIDAFPYHADQMLRYAVQQAM
KEKVARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYLNKKHPIFL
FVPHVRYIEEISLLLKGLDNRIDGVHAEDPMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVIYFHYGKTEAMVRAKKHIQSMNKIAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=617890 LIT28_RS26235 WP_252209185.1 5060589..5061938(-) (comFA) [Bacillus thuringiensis strain KF1]
ATGCTTGCTGGAAAGCAGTTGCTATTAGAAGAACTTTCTTCAGATCTACTTAGGGACTTAAATAACTTGAAAAAGAAGGG
AGAGGTCGTATGTGTACAAGGTATAAAAAAGAAAGCTTCTAAATATACGTGTCAGCGCTGTGGAAATATAGAGCAGCGGC
TATTCGCCTCATTTTTATGCAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGAGGAATCGCTGAAAGAAACGGAGAAAAAGGTTTAAATTTGTTACAGTGGAACGGGACTTT
GTCTACTGGTCAACAGTTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATTGCAGAGGCACTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACGGATGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCGAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATGAAAAGGATGCAGCGTTAGTCGTTGCAACGACTCATCAACTGTTACGTTACTATAAAGCGTTTC
ATGTCATGATTGTAGATGAGATAGATGCCTTCCCGTATCATGCGGATCAAATGTTACGGTATGCAGTGCAACAAGCGATG
AAAGAGAAAGTAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAAGGGGGAAACAAAA
AGGCATCATTGTCTCAGGAAGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GTCTTCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGTACTTAAACAAAAAGCATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGCCTGTTATTGAAAGGGTTGGATAATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATCTTTTCGGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTATGGTGAGGTTATTTATTTTCATTACGGTAAGACAGAGGC
GATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAATTGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (107-254)

• Helicase conserved C-terminal domain (Helicase_C) (313-408)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.131	98.441	0.503