Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LIT28_RS20360 Genome accession   NZ_CP085409
Coordinates   3991570..3992028 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3986570..3997028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS20345 (LIT28_20355) - 3987227..3987463 (+) 237 WP_000283743.1 hypothetical protein -
  LIT28_RS20350 (LIT28_20360) - 3987637..3989745 (-) 2109 WP_063223138.1 polyphosphate kinase -
  LIT28_RS20355 (LIT28_20365) ppx 3989854..3991392 (-) 1539 WP_242252075.1 exopolyphosphatase -
  LIT28_RS20360 (LIT28_20370) kre 3991570..3992028 (+) 459 WP_000804864.1 YkyB family protein Regulator
  LIT28_RS20365 (LIT28_20375) - 3992060..3992722 (-) 663 WP_063223136.1 YkyA family protein -
  LIT28_RS20370 (LIT28_20380) - 3993372..3994013 (-) 642 WP_242252076.1 diguanylate cyclase -
  LIT28_RS20375 (LIT28_20385) - 3994178..3994411 (+) 234 WP_063223134.1 SPP1 phage holin family protein -
  LIT28_RS20380 (LIT28_20390) - 3994443..3994943 (-) 501 WP_242252077.1 hypothetical protein -
  LIT28_RS20385 (LIT28_20395) - 3995471..3997012 (+) 1542 WP_000445746.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=617874 LIT28_RS20360 WP_000804864.1 3991570..3992028(+) (kre) [Bacillus thuringiensis strain KF1]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=617874 LIT28_RS20360 WP_000804864.1 3991570..3992028(+) (kre) [Bacillus thuringiensis strain KF1]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCGAAGTATTTATACTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTGCTGAAA
AAAAAGCTATTAAAGAAGGATTGCATTTTTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTTGGCCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAGACACTTCAAGATTACATTGGTCCTGAAGCACTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterProScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493