Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIT28_RS09790 Genome accession   NZ_CP085409
Coordinates   1921282..1921569 (+) Length   95 a.a.
NCBI ID   WP_063222805.1    Uniprot ID   A0A2B0WV84
Organism   Bacillus thuringiensis strain KF1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916282..1926569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS09770 (LIT28_09775) - 1917460..1917657 (+) 198 WP_242251591.1 DUF4083 domain-containing protein -
  LIT28_RS09775 (LIT28_09780) - 1917688..1918149 (+) 462 WP_242251592.1 NUDIX hydrolase -
  LIT28_RS09780 (LIT28_09785) nadE 1918197..1919015 (-) 819 WP_242251593.1 ammonia-dependent NAD(+) synthetase -
  LIT28_RS09785 (LIT28_09790) - 1919287..1921167 (+) 1881 WP_242251594.1 ABC transporter permease -
  LIT28_RS09790 (LIT28_09795) abrB 1921282..1921569 (+) 288 WP_063222805.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIT28_RS09795 (LIT28_09800) - 1921849..1922799 (+) 951 WP_242251595.1 serine protease -
  LIT28_RS09800 (LIT28_09805) - 1922841..1923149 (-) 309 WP_242251596.1 helix-turn-helix transcriptional regulator -
  LIT28_RS09805 (LIT28_09810) - 1923215..1924150 (+) 936 WP_242251597.1 aldo/keto reductase -
  LIT28_RS09810 (LIT28_09815) - 1924200..1925375 (+) 1176 Protein_1851 MFS transporter -
  LIT28_RS09815 (LIT28_09820) - 1925872..1926234 (+) 363 WP_063222800.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10620.39 Da        Isoelectric Point: 6.9807

>NTDB_id=617867 LIT28_RS09790 WP_063222805.1 1921282..1921569(+) (abrB) [Bacillus thuringiensis strain KF1]
MKATGIIRKVDELGRIVIPKELREVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDKNISLANGNITVSIDGAK
HLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=617867 LIT28_RS09790 WP_063222805.1 1921282..1921569(+) (abrB) [Bacillus thuringiensis strain KF1]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAGTTACGAGAAGTATTAGG
AATCCAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGATAAAAACATATCATTAGCAAATGGGAATATTACTGTTAGTATAGATGGAGCGAAA
CACTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B0WV84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.667

94.737

0.537