Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIT28_RS07605 Genome accession   NZ_CP085409
Coordinates   1463930..1464532 (-) Length   200 a.a.
NCBI ID   WP_242251218.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1458930..1469532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS07585 (LIT28_07585) dnaD 1459219..1459926 (+) 708 WP_060630206.1 DNA replication protein DnaD -
  LIT28_RS07590 (LIT28_07590) nth 1459942..1460589 (+) 648 WP_063224135.1 endonuclease III -
  LIT28_RS07595 (LIT28_07595) - 1460593..1461111 (+) 519 WP_063224134.1 YpoC family protein -
  LIT28_RS07600 (LIT28_07600) - 1461135..1463864 (-) 2730 WP_242251217.1 PBP1A family penicillin-binding protein -
  LIT28_RS07605 (LIT28_07605) recU 1463930..1464532 (-) 603 WP_242251218.1 Holliday junction resolvase RecU Machinery gene
  LIT28_RS07610 (LIT28_07610) - 1464636..1465661 (+) 1026 WP_242251219.1 DUF2515 domain-containing protein -
  LIT28_RS07615 (LIT28_07615) - 1465867..1466043 (-) 177 WP_002020884.1 hypothetical protein -
  LIT28_RS07620 (LIT28_07620) - 1466129..1466371 (+) 243 WP_001252039.1 hypothetical protein -
  LIT28_RS07625 (LIT28_07625) - 1466387..1466731 (+) 345 WP_097949079.1 YppE family protein -
  LIT28_RS07630 (LIT28_07630) - 1466758..1466949 (-) 192 WP_000242661.1 YppF family protein -
  LIT28_RS07635 (LIT28_07635) - 1467127..1467627 (+) 501 WP_242251220.1 YppG family protein -
  LIT28_RS07640 (LIT28_07640) - 1467784..1468233 (+) 450 WP_242251221.1 CotD family spore coat protein -
  LIT28_RS07645 (LIT28_07645) - 1468289..1468843 (+) 555 WP_063224128.1 DUF1273 domain-containing protein -
  LIT28_RS07650 (LIT28_07650) gpsB 1468941..1469276 (+) 336 WP_063224127.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23360.63 Da        Isoelectric Point: 9.4541

>NTDB_id=617866 LIT28_RS07605 WP_242251218.1 1463930..1464532(-) (recU) [Bacillus thuringiensis strain KF1]
MTIRYPNGKRFNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=617866 LIT28_RS07605 WP_242251218.1 1463930..1464532(-) (recU) [Bacillus thuringiensis strain KF1]
ATGACCATTCGTTACCCAAATGGAAAACGGTTCAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATAGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCGTTTTGGAATCGTCAA
AATACTGGTGGACGGAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635