Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIT28_RS06285 Genome accession   NZ_CP085409
Coordinates   1221519..1221842 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216519..1226842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS06260 (LIT28_06260) - 1216821..1218107 (+) 1287 WP_242251023.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LIT28_RS06265 (LIT28_06265) sipW 1218298..1218867 (+) 570 WP_063224542.1 signal peptidase I SipW -
  LIT28_RS06270 (LIT28_06270) - 1218930..1219517 (+) 588 WP_000172840.1 CalY family protein -
  LIT28_RS06275 (LIT28_06275) - 1219679..1220449 (+) 771 WP_242251024.1 DUF4047 domain-containing protein -
  LIT28_RS06280 (LIT28_06280) calY 1220850..1221443 (+) 594 WP_063224540.1 biofilm matrix protein CalY -
  LIT28_RS06285 (LIT28_06285) sinR 1221519..1221842 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  LIT28_RS06290 (LIT28_06290) - 1221922..1222056 (-) 135 WP_060630024.1 anti-repressor SinI family protein -
  LIT28_RS06295 (LIT28_06295) inhA1 1222400..1224787 (+) 2388 WP_063224539.1 M6 family metalloprotease immune inhibitor InhA1 -
  LIT28_RS06300 (LIT28_06300) - 1224959..1226326 (+) 1368 WP_242251026.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=617864 LIT28_RS06285 WP_000578882.1 1221519..1221842(-) (sinR) [Bacillus thuringiensis strain KF1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=617864 LIT28_RS06285 WP_000578882.1 1221519..1221842(-) (sinR) [Bacillus thuringiensis strain KF1]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCCGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGACACTCTACTTCATGATGAAACAACAAAGGAAAATCACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692