Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIT24_RS26920 Genome accession   NZ_CP085406
Coordinates   5230926..5231438 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus bombysepticus strain F12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5225926..5236438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS26900 (LIT24_26910) rplI 5227137..5227583 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  LIT24_RS26905 (LIT24_26915) - 5227580..5229553 (-) 1974 WP_001113789.1 DHH family phosphoesterase -
  LIT24_RS26910 (LIT24_26920) - 5229632..5230566 (-) 935 Protein_5248 YybS family protein -
  LIT24_RS26915 (LIT24_26925) rpsR 5230647..5230880 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  LIT24_RS26920 (LIT24_26930) ssbA 5230926..5231438 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  LIT24_RS26925 (LIT24_26935) rpsF 5231465..5231755 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  LIT24_RS26930 (LIT24_26940) ychF 5231947..5233047 (-) 1101 WP_000524667.1 redox-regulated ATPase YchF -
  LIT24_RS26935 (LIT24_26945) - 5233163..5233360 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  LIT24_RS26940 (LIT24_26950) - 5233381..5234262 (-) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  LIT24_RS26945 (LIT24_26955) yyaC 5234522..5235118 (+) 597 WP_001020715.1 spore protease YyaC -
  LIT24_RS26950 (LIT24_26960) spo0J 5235139..5235990 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=617847 LIT24_RS26920 WP_000981966.1 5230926..5231438(-) (ssbA) [Bacillus bombysepticus strain F12]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=617847 LIT24_RS26920 WP_000981966.1 5230926..5231438(-) (ssbA) [Bacillus bombysepticus strain F12]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394