Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LIT24_RS25535 Genome accession   NZ_CP085406
Coordinates   4936391..4937740 (-) Length   449 a.a.
NCBI ID   WP_047387211.1    Uniprot ID   -
Organism   Bacillus bombysepticus strain F12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4931391..4942740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS25500 (LIT24_25510) - 4931449..4932144 (-) 696 WP_000466510.1 hypothetical protein -
  LIT24_RS25505 (LIT24_25515) - 4932131..4932919 (-) 789 WP_144609808.1 hypothetical protein -
  LIT24_RS25510 (LIT24_25520) - 4932947..4933516 (-) 570 WP_001211058.1 hypothetical protein -
  LIT24_RS25515 (LIT24_25525) - 4933621..4934094 (-) 474 WP_144609809.1 hypothetical protein -
  LIT24_RS25520 (LIT24_25530) raiA 4934498..4935040 (-) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  LIT24_RS25525 (LIT24_25535) cspC 4935363..4935560 (-) 198 WP_001990088.1 cold shock protein CspC -
  LIT24_RS25530 (LIT24_25540) - 4935687..4936391 (-) 705 WP_074595201.1 ComF family protein -
  LIT24_RS25535 (LIT24_25545) comFA 4936391..4937740 (-) 1350 WP_047387211.1 ATP-dependent helicase ComFA Machinery gene
  LIT24_RS25540 (LIT24_25550) - 4937868..4939295 (-) 1428 WP_000499468.1 C40 family peptidase -
  LIT24_RS25545 (LIT24_25555) - 4939444..4939758 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  LIT24_RS25550 (LIT24_25560) - 4939931..4940773 (-) 843 WP_002097936.1 DegV family protein -
  LIT24_RS25555 (LIT24_25565) - 4941010..4941645 (+) 636 WP_000926665.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51036.92 Da        Isoelectric Point: 9.9516

>NTDB_id=617842 LIT24_RS25535 WP_047387211.1 4936391..4937740(-) (comFA) [Bacillus bombysepticus strain F12]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCAYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKNLIHKRIPRVLLQWLQTYLNKKFPIFL
FVPHVRYIEEISLLLKPLNNRIEGVYAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=617842 LIT24_RS25535 WP_047387211.1 4936391..4937740(-) (comFA) [Bacillus bombysepticus strain F12]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCGCATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGGGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGGCGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
ACCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACCATTAAACAATCGAATTGAAGGTGTATATGC
AGAAGATCCAGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGCGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATCGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAAGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.131

98.441

0.503
  comFA Latilactobacillus sakei subsp. sakei 23K

41.191

89.755

0.37