Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LIT24_RS21015 Genome accession   NZ_CP085406
Coordinates   4088107..4089150 (-) Length   347 a.a.
NCBI ID   WP_001013180.1    Uniprot ID   A0A9X5WLU9
Organism   Bacillus bombysepticus strain F12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4083107..4094150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS20970 (LIT24_20970) - 4083538..4083738 (-) 201 WP_000106083.1 YqzE family protein -
  LIT24_RS20975 (LIT24_20975) - 4083777..4084274 (-) 498 WP_000836650.1 shikimate kinase -
  LIT24_RS20980 (LIT24_20980) - 4084390..4085040 (-) 651 WP_000183860.1 2OG-Fe(II) oxygenase -
  LIT24_RS20985 (LIT24_20985) comGG 4085217..4085588 (-) 372 WP_001231273.1 competence type IV pilus minor pilin ComGG -
  LIT24_RS20990 (LIT24_20990) comGF 4085585..4086055 (-) 471 WP_000923098.1 competence type IV pilus minor pilin ComGF -
  LIT24_RS20995 (LIT24_20995) - 4086025..4086327 (-) 303 WP_000829471.1 hypothetical protein -
  LIT24_RS21000 (LIT24_21000) comGD 4086320..4086775 (-) 456 WP_000813142.1 competence type IV pilus minor pilin ComGD -
  LIT24_RS21005 (LIT24_21005) comGC 4086772..4087071 (-) 300 WP_001178686.1 competence type IV pilus major pilin ComGC -
  LIT24_RS21010 (LIT24_21010) comGB 4087083..4088114 (-) 1032 WP_000475184.1 competence type IV pilus assembly protein ComGB -
  LIT24_RS21015 (LIT24_21015) comGA 4088107..4089150 (-) 1044 WP_001013180.1 competence type IV pilus ATPase ComGA Machinery gene
  LIT24_RS21020 (LIT24_21020) - 4089356..4090051 (+) 696 WP_000434125.1 helix-turn-helix domain-containing protein -
  LIT24_RS21025 (LIT24_21025) - 4090177..4090419 (+) 243 WP_000440721.1 DUF2626 domain-containing protein -
  LIT24_RS21030 (LIT24_21030) - 4090526..4091920 (+) 1395 WP_001094334.1 L-cystine transporter -
  LIT24_RS21035 (LIT24_21035) - 4092000..4092393 (-) 394 Protein_4103 hypothetical protein -
  LIT24_RS21040 (LIT24_21040) - 4092481..4092696 (-) 216 WP_001008326.1 DUF3912 family protein -
  LIT24_RS21045 (LIT24_21045) - 4092949..4093260 (+) 312 WP_001093237.1 hypothetical protein -
  LIT24_RS21050 (LIT24_21050) - 4093295..4093783 (-) 489 WP_000764261.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39157.52 Da        Isoelectric Point: 8.5482

>NTDB_id=617831 LIT24_RS21015 WP_001013180.1 4088107..4089150(-) (comGA) [Bacillus bombysepticus strain F12]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGHELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=617831 LIT24_RS21015 WP_001013180.1 4088107..4089150(-) (comGA) [Bacillus bombysepticus strain F12]
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCAGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTCGTATTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGGGATGAGGAAACAGCAAAAATAGCTATAAGGGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTACTATATGGACATGAGTTAAAACAAGCACTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.908

100

0.559