Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LIT24_RS20660 Genome accession   NZ_CP085406
Coordinates   4035659..4036453 (-) Length   264 a.a.
NCBI ID   WP_021727703.1    Uniprot ID   A0A9X3FF97
Organism   Bacillus bombysepticus strain F12     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4030659..4041453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS20635 (LIT24_20635) - 4031183..4033255 (-) 2073 WP_016118618.1 sigma-54-dependent Fis family transcriptional regulator -
  LIT24_RS20640 (LIT24_20640) - 4033393..4033626 (+) 234 WP_001190210.1 DUF2627 domain-containing protein -
  LIT24_RS20645 (LIT24_20645) - 4033676..4034404 (-) 729 WP_100619271.1 glycerophosphodiester phosphodiesterase -
  LIT24_RS20650 (LIT24_20650) - 4034455..4034601 (+) 147 WP_001247671.1 YycC family protein -
  LIT24_RS20655 (LIT24_20655) - 4034843..4035406 (-) 564 WP_030027994.1 PRK06770 family protein -
  LIT24_RS20660 (LIT24_20660) spo0A 4035659..4036453 (-) 795 WP_021727703.1 sporulation transcription factor Spo0A Regulator
  LIT24_RS20665 (LIT24_20665) spoIVB 4036744..4038042 (-) 1299 WP_002098091.1 SpoIVB peptidase -
  LIT24_RS20670 (LIT24_20670) recN 4038161..4039900 (-) 1740 WP_000947763.1 DNA repair protein RecN Machinery gene
  LIT24_RS20675 (LIT24_20675) argR 4040165..4040614 (-) 450 WP_001032580.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29445.20 Da        Isoelectric Point: 7.1175

>NTDB_id=617829 LIT24_RS20660 WP_021727703.1 4035659..4036453(-) (spo0A) [Bacillus bombysepticus strain F12]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANTMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=617829 LIT24_RS20660 WP_021727703.1 4035659..4036453(-) (spo0A) [Bacillus bombysepticus strain F12]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGATGGTTTAGCTGTATTGGAGAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACAGCATTTGGCCAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACACTATGATTAAGCGTCCAC
TACCATCATTCCGATCAGCCACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCAATCTCCATGGTATACAATGATATTGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACAACAGCAAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTTATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAAGCTAGTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818