Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LIT24_RS19810 Genome accession   NZ_CP085406
Coordinates   3883897..3884331 (-) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus bombysepticus strain F12     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3878897..3889331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS19795 (LIT24_19795) - 3880088..3880645 (+) 558 WP_000062063.1 PadR family transcriptional regulator -
  LIT24_RS19800 (LIT24_19800) metE 3881144..3883432 (+) 2289 WP_001007613.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  LIT24_RS19805 (LIT24_19805) comJ 3883471..3883860 (-) 390 WP_000424030.1 competence protein ComJ -
  LIT24_RS19810 (LIT24_19810) nucA/comI 3883897..3884331 (-) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  LIT24_RS19815 (LIT24_19815) - 3884558..3885307 (+) 750 WP_000388471.1 DUF3967 domain-containing protein -
  LIT24_RS19820 (LIT24_19820) kinB 3885346..3886620 (-) 1275 WP_000420369.1 sporulation sensor histidine kinase KinB -
  LIT24_RS19825 (LIT24_19825) - 3886931..3887131 (+) 201 WP_000929280.1 hypothetical protein -
  LIT24_RS19830 (LIT24_19830) - 3887254..3888417 (+) 1164 WP_000434600.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=617828 LIT24_RS19810 WP_000811494.1 3883897..3884331(-) (nucA/comI) [Bacillus bombysepticus strain F12]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=617828 LIT24_RS19810 WP_000811494.1 3883897..3884331(-) (nucA/comI) [Bacillus bombysepticus strain F12]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGACATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGTGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATACC
CAGATGGTACGCGAGTAAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549