Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIT24_RS11990 Genome accession   NZ_CP085406
Coordinates   2318053..2318331 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus bombysepticus strain F12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2313053..2323331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS11970 (LIT24_11970) - 2314728..2315537 (+) 810 WP_044584465.1 papain-like cysteine protease family protein -
  LIT24_RS11975 (LIT24_11975) - 2315563..2316165 (+) 603 WP_000517260.1 hypothetical protein -
  LIT24_RS11980 (LIT24_11980) - 2316406..2316657 (-) 252 WP_030025648.1 helix-turn-helix transcriptional regulator -
  LIT24_RS11985 (LIT24_11985) - 2317034..2317912 (+) 879 WP_000397983.1 helix-turn-helix domain-containing protein -
  LIT24_RS11990 (LIT24_11990) abrB 2318053..2318331 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIT24_RS11995 (LIT24_11995) - 2318852..2320102 (+) 1251 WP_074595795.1 hypothetical protein -
  LIT24_RS12000 (LIT24_12000) - 2320170..2320928 (+) 759 WP_000347986.1 TSUP family transporter -
  LIT24_RS12005 (LIT24_12005) - 2321182..2321841 (+) 660 WP_000682538.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=617821 LIT24_RS11990 WP_000842216.1 2318053..2318331(+) (abrB) [Bacillus bombysepticus strain F12]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=617821 LIT24_RS11990 WP_000842216.1 2318053..2318331(+) (abrB) [Bacillus bombysepticus strain F12]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGAGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489