Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIT24_RS07970 Genome accession   NZ_CP085406
Coordinates   1524211..1524813 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus bombysepticus strain F12     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1519211..1529813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS07950 (LIT24_07950) dnaD 1519526..1520233 (+) 708 WP_000728552.1 DNA replication protein DnaD -
  LIT24_RS07955 (LIT24_07955) nth 1520249..1520896 (+) 648 WP_000933034.1 endonuclease III -
  LIT24_RS07960 (LIT24_07960) - 1520900..1521418 (+) 519 WP_000442650.1 YpoC family protein -
  LIT24_RS07965 (LIT24_07965) - 1521445..1524144 (-) 2700 WP_001283099.1 PBP1A family penicillin-binding protein -
  LIT24_RS07970 (LIT24_07970) recU 1524211..1524813 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  LIT24_RS07975 (LIT24_07975) - 1524917..1525942 (+) 1026 WP_000495651.1 DUF2515 domain-containing protein -
  LIT24_RS29930 - 1526094..1526273 (-) 180 WP_001987054.1 hypothetical protein -
  LIT24_RS07980 (LIT24_07980) - 1526359..1526601 (+) 243 WP_001252036.1 hypothetical protein -
  LIT24_RS07985 (LIT24_07985) - 1526617..1526961 (+) 345 WP_000786940.1 YppE family protein -
  LIT24_RS07990 (LIT24_07990) - 1526988..1527179 (-) 192 WP_000242652.1 YppF family protein -
  LIT24_RS07995 (LIT24_07995) - 1527357..1527881 (+) 525 WP_030024706.1 YppG family protein -
  LIT24_RS08000 (LIT24_08000) - 1528037..1528465 (+) 429 WP_000546268.1 CotD family spore coat protein -
  LIT24_RS08005 (LIT24_08005) - 1528522..1529076 (+) 555 WP_000862913.1 DUF1273 domain-containing protein -
  LIT24_RS08010 (LIT24_08010) gpsB 1529174..1529509 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=617818 LIT24_RS07970 WP_000155598.1 1524211..1524813(-) (recU) [Bacillus bombysepticus strain F12]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=617818 LIT24_RS07970 WP_000155598.1 1524211..1524813(-) (recU) [Bacillus bombysepticus strain F12]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635