Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIT24_RS06635 Genome accession   NZ_CP085406
Coordinates   1281482..1281805 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus bombysepticus strain F12     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1276482..1286805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS06610 (LIT24_06610) - 1276808..1278094 (+) 1287 WP_000247029.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LIT24_RS06615 (LIT24_06615) - 1278285..1278854 (+) 570 WP_000767792.1 signal peptidase I SipW -
  LIT24_RS06620 (LIT24_06620) - 1278915..1279502 (+) 588 WP_000172854.1 CalY family protein -
  LIT24_RS06625 (LIT24_06625) - 1279637..1280425 (+) 789 WP_252209900.1 DUF4047 domain-containing protein -
  LIT24_RS06630 (LIT24_06630) calY 1280813..1281406 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  LIT24_RS06635 (LIT24_06635) sinR 1281482..1281805 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  LIT24_RS06640 (LIT24_06640) - 1281885..1282019 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  LIT24_RS06645 (LIT24_06645) inhA1 1282362..1284752 (+) 2391 WP_001035951.1 M6 family metalloprotease immune inhibitor InhA1 -
  LIT24_RS06650 (LIT24_06650) - 1284924..1286291 (+) 1368 WP_000028383.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=617816 LIT24_RS06635 WP_000578885.1 1281482..1281805(-) (sinR) [Bacillus bombysepticus strain F12]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=617816 LIT24_RS06635 WP_000578885.1 1281482..1281805(-) (sinR) [Bacillus bombysepticus strain F12]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692