Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LIT24_RS06130 Genome accession   NZ_CP085406
Coordinates   1184320..1184496 (+) Length   58 a.a.
NCBI ID   WP_001986215.1    Uniprot ID   A0A9W5QJV7
Organism   Bacillus bombysepticus strain F12     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1179320..1189496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS06110 (LIT24_06110) clpC 1179650..1182250 (+) 2601 WP_000365404.1 ATP-dependent chaperone ClpB Regulator
  LIT24_RS06115 (LIT24_06115) - 1182290..1182472 (-) 183 WP_001211116.1 YjzD family protein -
  LIT24_RS06120 (LIT24_06120) - 1182629..1183363 (+) 735 WP_000028714.1 hydrolase -
  LIT24_RS06125 (LIT24_06125) - 1183393..1184265 (+) 873 WP_001986101.1 NAD(P)-dependent oxidoreductase -
  LIT24_RS06130 (LIT24_06130) comZ 1184320..1184496 (+) 177 WP_001986215.1 ComZ family protein Regulator
  LIT24_RS06135 (LIT24_06135) fabH 1184717..1185649 (+) 933 WP_001100533.1 beta-ketoacyl-ACP synthase III -
  LIT24_RS06140 (LIT24_06140) fabF 1185681..1186919 (+) 1239 WP_000412652.1 beta-ketoacyl-ACP synthase II -
  LIT24_RS06145 (LIT24_06145) - 1187026..1187814 (+) 789 WP_000513274.1 DUF2268 domain-containing putative Zn-dependent protease -
  LIT24_RS06150 (LIT24_06150) - 1187958..1188704 (+) 747 WP_000966128.1 YjbA family protein -

Sequence

Protein


Download         Length: 58 a.a.        Molecular weight: 6576.74 Da        Isoelectric Point: 4.4797

>NTDB_id=617811 LIT24_RS06130 WP_001986215.1 1184320..1184496(+) (comZ) [Bacillus bombysepticus strain F12]
MNEKSMQFLQIAMKHLPEAKAILDDNGIALDMEKAQPVLELLMKVMNEAYELGKADKE

Nucleotide


Download         Length: 177 bp        

>NTDB_id=617811 LIT24_RS06130 WP_001986215.1 1184320..1184496(+) (comZ) [Bacillus bombysepticus strain F12]
ATGAACGAAAAAAGCATGCAGTTTTTACAAATCGCAATGAAGCATTTACCGGAAGCAAAGGCAATTTTAGATGATAATGG
AATTGCACTTGATATGGAGAAGGCACAGCCGGTGTTAGAGTTGTTAATGAAAGTTATGAACGAGGCTTATGAGCTCGGGA
AAGCAGATAAAGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(3-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

61.818

94.828

0.586