Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SAIN_RS07480 Genome accession   NC_022244
Coordinates   1509856..1510782 (-) Length   308 a.a.
NCBI ID   WP_003026180.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504856..1515782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS07460 (SAIN_1450) - 1505840..1506805 (+) 966 WP_003026172.1 LacI family DNA-binding transcriptional regulator -
  SAIN_RS07465 (SAIN_1451) - 1506879..1507703 (-) 825 WP_021002027.1 Cof-type HAD-IIB family hydrolase -
  SAIN_RS07470 (SAIN_1452) amiF 1507846..1508769 (-) 924 WP_003031730.1 ATP-binding cassette domain-containing protein Regulator
  SAIN_RS07475 (SAIN_1453) amiE 1508780..1509847 (-) 1068 WP_021002028.1 ABC transporter ATP-binding protein Regulator
  SAIN_RS07480 (SAIN_1454) amiD 1509856..1510782 (-) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator
  SAIN_RS07485 (SAIN_1455) amiC 1510782..1512278 (-) 1497 WP_003026183.1 ABC transporter permease Regulator
  SAIN_RS07490 (SAIN_1456) amiA3 1512655..1514634 (-) 1980 WP_021002029.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34488.54 Da        Isoelectric Point: 9.7392

>NTDB_id=61781 SAIN_RS07480 WP_003026180.1 1509856..1510782(-) (amiD) [Streptococcus anginosus C1051]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILVAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=61781 SAIN_RS07480 WP_003026180.1 1509856..1510782(-) (amiD) [Streptococcus anginosus C1051]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACAATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGGTCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAACGGTCAATATTGGTTTGGTACAGATAGCAACGGGAAATCTCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCCATCCTCATTTCTGTCATTGCAACCGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCAAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
GATTCGTATCCAAATCATGCGTTATCGCGACTTGGAATATAACCTTGCCAGCCGAACTTTGGGTACGCCAACACTGAAAA
TCATCGTGAAAAACATCATGCCACAATTGGTTTCTGTTATTGTGACCACGGCTTCGCAACTGCTTCCAAGTTTCATTTCT
TATGAAGCGTTTCTATCGTTCTTTGGTTTAGGGCTTCCTGTCACAGTACCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAATGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

87.013

100

0.87
  amiD Streptococcus thermophilus LMG 18311

85.065

100

0.851
  amiD Streptococcus thermophilus LMD-9

85.065

100

0.851

Multiple sequence alignment