Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIT24_RS00220 Genome accession   NZ_CP085406
Coordinates   40321..40605 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus bombysepticus strain F12     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35321..45605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS00185 (LIT24_00185) tmk 35513..36139 (+) 627 WP_000677214.1 dTMP kinase -
  LIT24_RS00190 (LIT24_00190) holB 36175..37158 (+) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  LIT24_RS00195 (LIT24_00195) - 37164..37991 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  LIT24_RS00200 (LIT24_00200) yabA 38006..38356 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  LIT24_RS00205 (LIT24_00205) - 38439..39179 (+) 741 WP_100619403.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LIT24_RS00210 (LIT24_00210) - 39166..39456 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  LIT24_RS00215 (LIT24_00215) rsmI 39425..40300 (+) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LIT24_RS00220 (LIT24_00220) abrB 40321..40605 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIT24_RS00225 (LIT24_00225) metG 41064..43073 (+) 2010 WP_080000355.1 methionine--tRNA ligase -
  LIT24_RS00230 (LIT24_00230) - 43240..44007 (+) 768 WP_000895843.1 TatD family hydrolase -
  LIT24_RS00235 (LIT24_00235) rnmV 44222..44779 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=617799 LIT24_RS00220 WP_000843036.1 40321..40605(-) (abrB) [Bacillus bombysepticus strain F12]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=617799 LIT24_RS00220 WP_000843036.1 40321..40605(-) (abrB) [Bacillus bombysepticus strain F12]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851