Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LIS83_RS06645 Genome accession   NZ_CP085402
Coordinates   1294564..1294887 (-) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus anthracis strain CMF9     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289564..1299887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS83_RS06620 (LIS83_06625) - 1289802..1291088 (+) 1287 WP_042513060.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LIS83_RS06625 (LIS83_06630) sipW 1291283..1291852 (+) 570 WP_000767813.1 signal peptidase I SipW -
  LIS83_RS06630 (LIS83_06635) - 1291915..1292502 (+) 588 WP_000172840.1 CalY family protein -
  LIS83_RS06635 (LIS83_06640) - 1292664..1293467 (+) 804 WP_042513059.1 DUF4047 domain-containing protein -
  LIS83_RS06640 (LIS83_06645) calY 1293892..1294485 (+) 594 WP_000053735.1 biofilm matrix protein CalY -
  LIS83_RS06645 (LIS83_06650) sinR 1294564..1294887 (-) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  LIS83_RS06650 (LIS83_06655) - 1294967..1295101 (-) 135 WP_000276214.1 anti-repressor SinI family protein -
  LIS83_RS06655 (LIS83_06660) inhA1 1295445..1297832 (+) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  LIS83_RS06660 (LIS83_06665) - 1298004..1299371 (+) 1368 WP_042513058.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=617765 LIS83_RS06645 WP_000578878.1 1294564..1294887(-) (sinR) [Bacillus anthracis strain CMF9]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=617765 LIS83_RS06645 WP_000578878.1 1294564..1294887(-) (sinR) [Bacillus anthracis strain CMF9]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7H7A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692