Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LIS81_RS21190 Genome accession   NZ_CP085399
Coordinates   4124339..4125085 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus tropicus strain CK18     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4119339..4130085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS21175 (LIS81_21190) dnaG 4120109..4121905 (-) 1797 WP_000528216.1 DNA primase -
  LIS81_RS28655 - 4122267..4122389 (-) 123 WP_264195464.1 hypothetical protein -
  LIS81_RS21180 (LIS81_21195) - 4122757..4123569 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  LIS81_RS21185 (LIS81_21200) - 4123599..4124231 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  LIS81_RS21190 (LIS81_21205) recO 4124339..4125085 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  LIS81_RS21195 (LIS81_21210) - 4125119..4125262 (-) 144 WP_000883924.1 YqzL family protein -
  LIS81_RS21200 (LIS81_21215) era 4125439..4126344 (-) 906 WP_001080242.1 GTPase Era -
  LIS81_RS21205 (LIS81_21220) - 4126337..4126735 (-) 399 WP_001086294.1 cytidine deaminase -
  LIS81_RS21210 (LIS81_21225) - 4126835..4127188 (-) 354 WP_000715478.1 diacylglycerol kinase family protein -
  LIS81_RS21215 (LIS81_21230) ybeY 4127185..4127655 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  LIS81_RS21220 (LIS81_21235) - 4127652..4129796 (-) 2145 WP_226640677.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=617733 LIS81_RS21190 WP_000487010.1 4124339..4125085(-) (recO) [Bacillus tropicus strain CK18]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=617733 LIS81_RS21190 WP_000487010.1 4124339..4125085(-) (recO) [Bacillus tropicus strain CK18]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAGTTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552