Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SAIN_RS06655 Genome accession   NC_022244
Coordinates   1354592..1354888 (-) Length   98 a.a.
NCBI ID   WP_003023736.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1349592..1359888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS06640 (SAIN_1286) recR 1350161..1350757 (-) 597 WP_021001926.1 recombination mediator RecR -
  SAIN_RS06645 (SAIN_1287) pbp2b 1350768..1352828 (-) 2061 WP_021001927.1 penicillin-binding protein PBP2B -
  SAIN_RS09925 - 1353191..1353358 (-) 168 WP_003023739.1 hypothetical protein -
  SAIN_RS06650 (SAIN_1288) - 1353365..1354570 (-) 1206 WP_003023737.1 hypothetical protein -
  SAIN_RS06655 (SAIN_1289) HI0659 1354592..1354888 (-) 297 WP_003023736.1 helix-turn-helix domain-containing protein Machinery gene
  SAIN_RS06660 (SAIN_1290) - 1354878..1355243 (-) 366 WP_003023734.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SAIN_RS06665 - 1355518..1355748 (-) 231 WP_003023732.1 hypothetical protein -
  SAIN_RS06670 (SAIN_1291) - 1356026..1356562 (+) 537 Protein_1291 site-specific integrase -
  SAIN_RS06675 (SAIN_1292) - 1356720..1357412 (-) 693 WP_003023729.1 phosphoglycerate mutase -
  SAIN_RS06680 (SAIN_1293) - 1357553..1358014 (-) 462 WP_021001929.1 Fur family transcriptional regulator -
  SAIN_RS06685 (SAIN_1294) - 1358191..1358466 (-) 276 WP_003023726.1 HU family DNA-binding protein -
  SAIN_RS06690 (SAIN_1295) - 1358595..1359428 (-) 834 WP_003023725.1 DegV family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10699.35 Da        Isoelectric Point: 4.8780

>NTDB_id=61773 SAIN_RS06655 WP_003023736.1 1354592..1354888(-) (HI0659) [Streptococcus anginosus C1051]
MKNSAIGSNWKDVRAELFSKEEILESDMRVAIMSELIDARNEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEGEQVS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=61773 SAIN_RS06655 WP_003023736.1 1354592..1354888(-) (HI0659) [Streptococcus anginosus C1051]
ATGAAAAATAGTGCAATTGGTAGTAACTGGAAAGATGTGAGAGCTGAACTTTTTTCCAAAGAGGAAATTTTGGAGAGTGA
TATGCGCGTGGCAATCATGAGTGAGCTGATTGATGCTAGAAATGAAAAAGGGATCAGTCAGAAAAAACTTGAGGAACTAA
GCGGAGTAAGTCAGCCAGTTATTGCTAGAATGGAAACAGGTAAGACAAGTCCACAACTTGATACTGTTTTAAAAGTCTTG
GCAAGTCTTGGGAAAACTTTGGCAGTTGTACCCTTAGAGGGCGAACAGGTAAGCTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.341

92.857

0.551

Multiple sequence alignment