Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LIS81_RS19665 Genome accession   NZ_CP085399
Coordinates   3856228..3856686 (+) Length   152 a.a.
NCBI ID   WP_048550574.1    Uniprot ID   A0AAW5X2I0
Organism   Bacillus tropicus strain CK18     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3851228..3861686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS19650 (LIS81_19665) - 3851888..3852124 (+) 237 WP_000283743.1 hypothetical protein -
  LIS81_RS19655 (LIS81_19670) - 3852298..3854406 (-) 2109 WP_226640757.1 polyphosphate kinase -
  LIS81_RS19660 (LIS81_19675) - 3854515..3856050 (-) 1536 WP_226640756.1 Ppx/GppA family phosphatase -
  LIS81_RS19665 (LIS81_19680) kre 3856228..3856686 (+) 459 WP_048550574.1 YkyB family protein Regulator
  LIS81_RS19670 (LIS81_19685) - 3856718..3857380 (-) 663 WP_226640755.1 YkyA family protein -
  LIS81_RS19675 (LIS81_19690) - 3858015..3858656 (-) 642 WP_000680832.1 diguanylate cyclase -
  LIS81_RS19680 (LIS81_19695) - 3858821..3859054 (+) 234 WP_000939451.1 SPP1 phage holin family protein -
  LIS81_RS19685 (LIS81_19700) - 3859086..3859586 (-) 501 WP_071678862.1 hypothetical protein -
  LIS81_RS19690 (LIS81_19705) - 3860014..3861555 (+) 1542 WP_252210725.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=617728 LIS81_RS19665 WP_048550574.1 3856228..3856686(+) (kre) [Bacillus tropicus strain CK18]
MKPSQPQSQLQNQHSINRLAQAVFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=617728 LIS81_RS19665 WP_048550574.1 3856228..3856686(+) (kre) [Bacillus tropicus strain CK18]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAAGCTGTTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGCTTAATTACTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTCTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTACTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTCGGTCATCTTGAATCCTCCTA
TCGAAACCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCGCTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

66.379

76.316

0.507