Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LIS81_RS09900 Genome accession   NZ_CP085399
Coordinates   1919463..1919750 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus tropicus strain CK18     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1914463..1924750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS09880 (LIS81_09885) - 1915649..1915846 (+) 198 WP_001048099.1 DUF4083 domain-containing protein -
  LIS81_RS09885 (LIS81_09890) - 1915870..1916331 (+) 462 WP_000024988.1 NUDIX hydrolase -
  LIS81_RS09890 (LIS81_09895) nadE 1916377..1917195 (-) 819 WP_000174883.1 ammonia-dependent NAD(+) synthetase -
  LIS81_RS09895 (LIS81_09900) - 1917467..1919347 (+) 1881 WP_252211205.1 ABC transporter permease -
  LIS81_RS09900 (LIS81_09905) abrB 1919463..1919750 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LIS81_RS09905 (LIS81_09910) - 1920024..1920974 (+) 951 WP_001089039.1 serine protease -
  LIS81_RS09910 (LIS81_09915) ugpC 1921188..1922291 (-) 1104 WP_252211206.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  LIS81_RS09915 (LIS81_09920) - 1922560..1923423 (-) 864 WP_252211207.1 helix-turn-helix domain-containing protein -
  LIS81_RS09920 (LIS81_09925) - 1923492..1924352 (-) 861 WP_252211208.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=617723 LIS81_RS09900 WP_000648330.1 1919463..1919750(+) (abrB) [Bacillus tropicus strain CK18]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=617723 LIS81_RS09900 WP_000648330.1 1919463..1919750(+) (abrB) [Bacillus tropicus strain CK18]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516